Regulon of AraR in Thermotoga petrophila RKU-1
| Regulator type: | Transcription factor |
| TF locus tag: | Tpet_0649 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Regulog: | AraR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 22 |
| - Operons | 5 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - AraR
- By TF family - GntR/Others
- By effector - Arabinose
- By pathway - Arabinose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -150
Score: 6.5 Sequence: ATAAAAGTACGTACCTTTAT
Position: -48
Score: 4.7 Sequence: CCATCGGTACGTACCGTTAT
Locus tag: Tpet_0647
Name: araE Funciton: Predicted arabinosides or arabinose ABC transport system, substrate-binding protein
Locus tag: Tpet_0646
Name: araE Funciton: Predicted arabinosides or arabinose ABC transport system, substrate-binding protein
Locus tag: Tpet_0645
Name: araF Funciton: Predicted arabinosides or arabinose ABC transport system, permease protein 1
Locus tag: Tpet_0644
Name: araG Funciton: Predicted arabinosides or arabinose ABC transport system, permease protein 2 |
|||
|
araE
|
Predicted arabinosides or arabinose ABC transport system, substrate-binding protein
|
||
|
araE
|
Predicted arabinosides or arabinose ABC transport system, substrate-binding protein
|
||
|
araF
|
Predicted arabinosides or arabinose ABC transport system, permease protein 1
|
||
|
araG
|
Predicted arabinosides or arabinose ABC transport system, permease protein 2
|
||
|
Position: -221
Score: 5.7 Sequence: AGATAGGTACGTACCAATTT
Position: -38
Score: 5.4 Sequence: ATATATGTACGTACAAAATG
Locus tag: Tpet_0637
Name: abf6 Funciton: Predicted Aapha-N-arabinofuranosidase (EC 3.2.1.55)
Locus tag: Tpet_0638
Name: lamG1 Funciton: Laminin G domain-containing protein
Locus tag: Tpet_0639
Name: abf6 Funciton: Predicted Aapha-N-arabinofuranosidase (EC 3.2.1.55)
Locus tag: Tpet_0640
Name: conA1 Funciton: Con A-like domain-containing protein
Locus tag: Tpet_0641
Name: conA2 Funciton: Con A-like domain-containing protein
Locus tag: Tpet_0642
Name: lamG2 Funciton: Laminin G domain-containing protein |
|||
|
abf6
|
Predicted Aapha-N-arabinofuranosidase (EC 3.2.1.55)
|
||
|
lamG1
|
Laminin G domain-containing protein
|
||
|
abf6
|
Predicted Aapha-N-arabinofuranosidase (EC 3.2.1.55)
|
||
|
conA1
|
Con A-like domain-containing protein
|
||
|
conA2
|
Con A-like domain-containing protein
|
||
|
lamG2
|
Laminin G domain-containing protein
|
||
|
Position: -164
Score: 4.7 Sequence: ATAACGGTACGTACCGATGG
Position: -62
Score: 6.5 Sequence: ATAAAGGTACGTACTTTTAT
Locus tag: Tpet_0648
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
|||
|
araA
|
L-arabinose isomerase (EC 5.3.1.4)
|
||
|
Position: -55
Score: 5 Sequence: GATAATATACGTACCTAAAT
Locus tag: Tpet_0643
Name: glsA Funciton: Putative glycosyl hydrolase of unknown function (DUF1680) |
|||
|
glsA
|
Putative glycosyl hydrolase of unknown function (DUF1680)
|
||
|
Position: -233
Score: 5.4 Sequence: CATTTTGTACGTACATATAT
Position: -50
Score: 5.7 Sequence: AAATTGGTACGTACCTATCT
Locus tag: Tpet_0636
Name: araN-II Funciton: Predicted arabinose ABC transporter, substrate binding protein
Locus tag: Tpet_0635
Name: araP-II Funciton: Alpha-arabinosides ABC transport system, permease protein 1
Locus tag: Tpet_0634
Name: araQ-II Funciton: Alpha-arabinosides ABC transport system, permease protein 2
Locus tag: Tpet_0633
Name: abf3 Funciton: Alpha-N-arabinofuranosidase II (EC 3.2.1.55)
Locus tag: Tpet_0632
Name: xylX Funciton: Secreted glycosyl hydrolase, similar to xylosidase
Locus tag: Tpet_0631
Name: abfA Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55)
Locus tag: Tpet_0630
Name: araM Funciton: L-arabinose-specific 1-epimerase (mutarotase)
Locus tag: Tpet_0629
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: Tpet_0628
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: Tpet_0627
Name: araW Funciton: Predicted glycerol-1-phosphate dehydrogenase, arabinose operon |
|||
|
araN-II
|
Predicted arabinose ABC transporter, substrate binding protein
|
||
|
araP-II
|
Alpha-arabinosides ABC transport system, permease protein 1
|
||
|
araQ-II
|
Alpha-arabinosides ABC transport system, permease protein 2
|
||
|
abf3
|
Alpha-N-arabinofuranosidase II (EC 3.2.1.55)
|
||
|
xylX
|
Secreted glycosyl hydrolase, similar to xylosidase
|
||
|
abfA
|
Alpha-N-arabinofuranosidase (EC 3.2.1.55)
|
||
|
araM
|
L-arabinose-specific 1-epimerase (mutarotase)
|
||
|
araD
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
|
||
|
araB
|
Ribulokinase (EC 2.7.1.16)
|
||
|
araW
|
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |