Regulon of PhrR in Azotobacter vinelandii AvOP
| Regulator type: | Transcription factor |
| TF locus tag: | Avin_41410 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Light-dependent DNA repair |
| Effector: | Blue light; Adenosylcobalamin |
| Regulog: | PhrR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - PhrR
- By TF family - MerR
- By effector - Blue light
- By effector - Adenosylcobalamin
- By pathway - Light-dependent DNA repair
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -94
Score: 5.7 Sequence: TGTACAAACTGTTGATCATGTACA
Position: -43
Score: 5 Sequence: TATACAAATCATGAAAGCTGTACA
Locus tag: Avin_41400
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Avin_41410
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Avin_41430
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
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COG3272
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COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
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phrR
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Transcriptional regulator, MerR family, associated with photolyase
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phr
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Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
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Position: -78
Score: 4.4 Sequence: TGTACAAAGCGGGACACTGCTATA
Locus tag: Avin_10270
Name: folM Funciton: FolM Alternative dihydrofolate reductase 1
Locus tag: Avin_10260
Name: folB Funciton: Dihydroneopterin triphosphate epimerase
Locus tag: Avin_10250
Name: PF06844 Funciton: protein of unknown function DUF1244
Locus tag: Avin_10240
Name: PF08888 Funciton: HopJ type III effector protein |
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folM
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FolM Alternative dihydrofolate reductase 1
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folB
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Dihydroneopterin triphosphate epimerase
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PF06844
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protein of unknown function DUF1244
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PF08888
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HopJ type III effector protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |