Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA in Gluconacetobacter diazotrophicus PAl 5

Properties
Regulator type: Transcription factor
TF locus tag: Gdia_1577
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Regulog: NifA - Rhodospirillales
Statistics of regulated genes:
- Genes 30
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 54 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -120
Score: 4.8
Sequence: TGTCGGACATGAGACA
Locus tag: Gdia_1576
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: Gdia_1575
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: Gdia_1574
Name: PF01816
Funciton: Leucine-rich FeS4 cluster domain protein
Locus tag: Gdia_1573
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: Gdia_1572
Name: nifT
Funciton: Nitrogen fixation protein nifT
Locus tag: Gdia_1571
Name: sir2
Funciton: Conserved hypothetical protein
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
fdxN
4Fe-4S ferredoxin, nitrogenase-associated
PF01816
Leucine-rich FeS4 cluster domain protein
nifZ
Nitrogen fixation protein NifZ
nifT
Nitrogen fixation protein nifT
sir2
Conserved hypothetical protein

Position: -132
Score: 5.1
Sequence: CGTCGGGAATCCGACA
Position: -115
Score: 4.2
Sequence: CGTTGCAAATCGGACA
Locus tag: Gdia_1560
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: Gdia_1559
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: Gdia_1558
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: Gdia_1557
Name: nifV
Funciton: Homocitrate synthase (EC 2.3.3.14)
Locus tag: Gdia_1556
Name: nifW
Funciton: Nitrogenase-stabilizing/protective protein nifW
iscN
Fe-S cofactor nitrogenase synthesis protein IscN
nifU
Iron-sulfur cluster assembly scaffold protein NifU
nifS
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
nifV
Homocitrate synthase (EC 2.3.3.14)
nifW
Nitrogenase-stabilizing/protective protein nifW

Position: -156
Score: 4
Sequence: TGTCAGGCTTCGCACA
Locus tag: Gdia_1570
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Gdia_1569
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Gdia_1568
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: Gdia_1567
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: Gdia_1566
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: Gdia_1565
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: Gdia_1564
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Gdia_1563
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Gdia_1562
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: Gdia_1561
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
nifX
Nitrogenase FeMo-cofactor carrier protein NifX
PF03270
Conserved hypothetical protein, probably related to nitrogen fixation protein
PF05082
Conserved hypothetical protein, probably related to nitrogen fixation protein
fdxB
Nitrogenase specific ferredoxin III protein FdxB
nifQ
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ

Position: -125
Score: 3.7
Sequence: TGTCGCCAAGCGGCCC
Locus tag: Gdia_1579
Name: modA
Funciton: Molybdate ABC transporter,substrate-binding protein
Locus tag: Gdia_1580
Name: modB
Funciton: Molybdate ABC transporter, permease protein
Locus tag: Gdia_1581
Name: modC
Funciton: Molybdate ABC transporter, ATP-binding protein
Locus tag: Gdia_1582
Name: rpoN
Funciton: RNA polymerase sigma-54 factor RpoN
modA
Molybdate ABC transporter,substrate-binding protein
modB
Molybdate ABC transporter, permease protein
modC
Molybdate ABC transporter, ATP-binding protein
rpoN
RNA polymerase sigma-54 factor RpoN

Position: -181
Score: 4.6
Sequence: TGTCGGAGTTGACACA
Locus tag: Gdia_1555
Name: fixB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Gdia_1554
Name: fixA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Gdia_1553
Name: fixC
Funciton: Electron-transferring-flavoprotein dehydrogenase
Locus tag: Gdia_1552
Name: fixX
Funciton: Ferredoxin-like protein, FixX
Locus tag: Gdia_1551
Name: modD
Funciton: Molybdenum transport system protein ModD
fixB
Electron transfer flavoprotein, beta subunit
fixA
Electron transfer flavoprotein, alpha subunit
fixC
Electron-transferring-flavoprotein dehydrogenase
fixX
Ferredoxin-like protein, FixX
modD
Molybdenum transport system protein ModD
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