Regulon of Rex in Rhodococcus sp. RHA1
| Regulator type: | Transcription factor |
| TF locus tag: | RHA1_ro02054 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Nocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 35 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -95
Score: 5.2 Sequence: TTGTGACTGTTGTCACAG
Locus tag: RHA1_ro02071
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC: 6.2.1.3 )
Locus tag: RHA1_ro02070
Name: gpm Funciton: Phosphoglycerate mutase (EC 5.4.2.1) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC: 6.2.1.3 )
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gpm
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Phosphoglycerate mutase (EC 5.4.2.1)
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Position: -40
Score: 5.4 Sequence: TTGTGACAGCCATCACAA
Locus tag: RHA1_ro02831
Name: dhaS Funciton: Acetaldehyde dehydrogenase (EC 1.2.1.10)
Locus tag: RHA1_ro02832
Name: adhB Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent |
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dhaS
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Acetaldehyde dehydrogenase (EC 1.2.1.10)
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adhB
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Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
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Position: -71
Score: 5.9 Sequence: TTGTGGCAGCTGTCACAA
Locus tag: RHA1_ro06201
Name: choD Funciton: Cholesterol oxidase (EC 1.1.3.6) |
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choD
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Cholesterol oxidase (EC 1.1.3.6)
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Position: -17
Score: 4.4 Sequence: TTGTGAGGTAGGTCACAA
Locus tag: RHA1_ro05230
Name: coxM Funciton: Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
Locus tag: RHA1_ro05231
Name: coxS Funciton: Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
Locus tag: RHA1_ro05232
Name: coxL Funciton: Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
Locus tag: RHA1_ro05233
Name: coxF Funciton: Carbon monoxide dehydrogenase F protein
Locus tag: RHA1_ro05234
Name: coxD Funciton: Carbon monoxide dehydrogenase D protein
Locus tag: RHA1_ro05235
Name: coxG Funciton: Carbon monoxide dehydrogenase G protein
Locus tag: RHA1_ro05236
Name: coxE Funciton: Carbon monoxide dehydrogenase E protein |
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coxM
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Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
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coxS
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Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
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coxL
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Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
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coxF
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Carbon monoxide dehydrogenase F protein
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coxD
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Carbon monoxide dehydrogenase D protein
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coxG
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Carbon monoxide dehydrogenase G protein
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coxE
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Carbon monoxide dehydrogenase E protein
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Position: -88
Score: 3.9 Sequence: CTGTGGCATAACTCACAA
Locus tag: RHA1_ro05909
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: RHA1_ro05910
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: RHA1_ro05911
Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: RHA1_ro05912
Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: RHA1_ro05913
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: RHA1_ro05914
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: RHA1_ro05915
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: RHA1_ro05916
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: RHA1_ro05917
Name: nuoI Funciton: NADH-quinone oxidoreductase chain I
Locus tag: RHA1_ro05918
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: RHA1_ro05919
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: RHA1_ro05920
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: RHA1_ro05921
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: RHA1_ro05922
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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nuoA
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NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
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NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
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nuoC
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NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
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nuoD
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NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
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nuoE
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NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nuoF
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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nuoG
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NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH
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NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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nuoI
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NADH-quinone oxidoreductase chain I
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL
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NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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Position: -215
Score: 4.9 Sequence: CTGTGACCGGGTTCACAA
Locus tag: RHA1_ro01583
Name: pntAa Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: RHA1_ro01582
Name: pntAb Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: RHA1_ro01581
Name: pntB Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
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pntAa
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NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
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pntAb
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NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
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pntB
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NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
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Position: -103
Score: 6.3 Sequence: TCGTGAAAGCATTCACAA
Locus tag: RHA1_ro06345
Name: whiB Funciton: WhiB-family transcriptional regulator involved in differentiation and sporulation |
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whiB
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WhiB-family transcriptional regulator involved in differentiation and sporulation
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Position: 22
Score: 5.8 Sequence: TTGTGCATGGGTTCACAA
Locus tag: RHA1_ro02054
Name: rex Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: RHA1_ro02053
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: RHA1_ro02052
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: RHA1_ro02051
Name: hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: RHA1_ro02050
Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24) |
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rex
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Redox-sensitive transcriptional regulator Rex
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hemA
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Glutamyl-tRNA reductase (EC 1.2.1.70)
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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hemD
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
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hemB
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Porphobilinogen synthase (EC 4.2.1.24)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |