Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PaaR in Burkholderia sp. 383

Properties
Regulator type: Transcription factor
TF locus tag: Bcep18194_A3423
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Burkholderia
Statistics of regulated genes:
- Genes 16
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 27 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -60
Score: 6.3
Sequence: ATATACCGACCGGTCGGTTTAT
Locus tag: Bcep18194_B1317
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: Bcep18194_B1318
Name: paaK2
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Bcep18194_B1319
Name: paaF2
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaH
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaK2
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaF2
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -63
Score: 6.4
Sequence: TCCGACCAACCGGTCGGTTAAT
Locus tag: Bcep18194_A3630
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: Bcep18194_A3629
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: Bcep18194_A3628
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Bcep18194_A3627
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: Bcep18194_A3626
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaJ
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
paaY
thioesterase superfamily protein
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)

Position: -88
Score: 6.6
Sequence: ATTAACCGACCGGTTGGTCGGA
Locus tag: Bcep18194_A3631
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaG
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -61
Score: 7.1
Sequence: ATTAACCGACCGGTCGGTTGGT
Locus tag: Bcep18194_A3429
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Bcep18194_A3428
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Bcep18194_A3427
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Bcep18194_A3426
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Bcep18194_A3425
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Bcep18194_A3424
Name: paaW
Funciton: Protein of unknown function DUF3658/DUF1835
Locus tag: Bcep18194_A3423
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaW
Protein of unknown function DUF3658/DUF1835
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD