Regulon of PaaR in Burkholderia pseudomallei K96243
| Regulator type: | Transcription factor |
| TF locus tag: | BPSL3236 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Burkholderia
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -64
Score: 6.4 Sequence: TCCGACCAACCGGTCGGTTAAT
Locus tag: BPSL3041
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: BPSL3042
Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: BPSL3043
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: BPSL3044
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: BPSL3045
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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paaJ
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Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
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paaF
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaY
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thioesterase superfamily protein
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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Position: -70
Score: 6.6 Sequence: ATTAACCGACCGGTTGGTCGGA
Locus tag: BPSL3040
Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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paaG
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -62
Score: 7.1 Sequence: ATTAACCGACCGGTCGGTTGGT
Locus tag: BPSL3230
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: BPSL3231
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: BPSL3232
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: BPSL3233
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: BPSL3234
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: BPSL3235
Name: paaW Funciton: Protein of unknown function DUF3658/DUF1835
Locus tag: BPSL3236
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaA
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Phenylacetate-CoA oxygenase, PaaA subunit
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paaB
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Phenylacetate-CoA oxygenase, PaaB subunit
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paaC
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Phenylacetate-CoA oxygenase, PaaC subunit
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paaD
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Phenylacetate-CoA oxygenase, PaaD subunit
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paaE
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
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paaW
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Protein of unknown function DUF3658/DUF1835
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |