Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PaaR in Rhodococcus sp. RHA1

Properties
Regulator type: Transcription factor
TF locus tag: RHA1_ro02633
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Actinobacteria
Statistics of regulated genes:
- Genes 15
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -80
Score: 4.7
Sequence: TTCAACCGAACCTTCGGTCGGC
Locus tag: RHA1_ro02633
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family

Position: -128
Score: 5.6
Sequence: AATAACCGAATCTTCGGTCGGT
Position: -32
Score: 5.1
Sequence: ACCGACCGAACGTACGGTGAAA
Locus tag: RHA1_ro02864
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: RHA1_ro02865
Name: ethD
Funciton: Possible ethyl tert-butyl ether degradation protein EthD
Locus tag: RHA1_ro02866
Name: paaI
Funciton: Phenylacetic acid degradation protein PaaI, thioesterase
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
ethD
Possible ethyl tert-butyl ether degradation protein EthD
paaI
Phenylacetic acid degradation protein PaaI, thioesterase

Position: -34
Score: 5
Sequence: ACCAACCGATCATTCGGTAATA
Locus tag: RHA1_ro02859
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: RHA1_ro02858
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: RHA1_ro02857
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: RHA1_ro02856
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: RHA1_ro02855
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: RHA1_ro02854
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)

Position: -149
Score: 5.1
Sequence: TTTCACCGTACGTTCGGTCGGT
Position: -53
Score: 5.3
Sequence: ACCGACCGAAGATTCGGTTATT
Locus tag: RHA1_ro02863
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: RHA1_ro02862
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: RHA1_ro02861
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: RHA1_ro02860
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaJ
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
paaH
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaG
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -124
Score: 5.5
Sequence: ACCAACCGAACGTACGGTTATA
Position: -40
Score: 4.8
Sequence: CCTGACCGAACAGTCGTTCGCA
Locus tag: RHA1_ro02082
Name: paaT
Funciton: Predicted phylacetic acid transporter PaaT
paaT
Predicted phylacetic acid transporter PaaT
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD