Profile of regulator PaaR in Actinobacteria
Properties
| Regulator family: |
TetR |
| Regulation mode: |
repressor |
| Biological process: |
Phenylacetic acid degradation |
| Effector: |
Phenylacetyl-CoA |
| Regulog: |
PaaR - Actinobacteria |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Acidothermus cellulolyticus 11B
|
|
Acel_1443 |
paaA |
-41 |
5.3 |
GTCAACCGAACATTCGGTCGGT |
|
Acel_1435 |
paaZ |
-177 |
4.9 |
GCCGACCGAACGTTCGGTCTAG |
|
Arthrobacter chlorophenolicus A6
|
|
Achl_3063 |
paaJ |
-83 |
6.1 |
ACAGAACGAACGGTCGGTAAGT |
|
Achl_3053 |
paaZ |
-82 |
6 |
TATTACCGAACGGACGGTCAGT |
|
Achl_2964 |
paaA |
-64 |
5.8 |
CCTGAACGAACGGTCGGTAAAT |
|
Achl_2302 |
paaT |
-73 |
5.3 |
ACCAACTGACCGTTCTGTCGGT |
|
Achl_3047 |
paaI |
-42 |
5.3 |
ACCTAATGAACATTCGGTAAAT |
|
Achl_3054 |
paaY |
-66 |
5.5 |
ACTGACCGTCCGTTCGGTAATA |
|
Arthrobacter sp. FB24
|
|
Arth_2568 |
paaT |
-87 |
5.5 |
ACTGACCGTTCGATCGGTAATT |
|
Arth_3246 |
paaI |
-42 |
5.3 |
ACCTAATGAACATTCGGTAAAT |
|
Arth_3268 |
paaJ |
-83 |
5.4 |
ATAGAACGAACGGTCGGTAAAT |
|
Arth_3255 |
paaZ |
-72 |
6 |
TATTACCGAACGGACGGTCAGT |
|
Arth_3218 |
paaA |
-49 |
5.9 |
CCTGAACGAACGGTCGGTAATT |
|
Arth_3256 |
paaY |
-128 |
5.5 |
ACTGACCGTCCGTTCGGTAATA |
|
Brevibacterium linens BL2
|
|
BlinB01000711 |
paaZ |
-101 |
5.9 |
AATAACCGACCGATTGGTTAGT |
|
BlinB01000710 |
paaT |
-191 |
5.3 |
ACTAACCAATCGGTCGGTTATT |
|
BlinB01000722 |
paaA |
-105 |
4.5 |
CAATACAGAACAAATGGTCAGT |
|
Corynebacterium efficiens YS-314
|
|
CE0665 |
paaR |
-599 |
5.6 |
ACTAACCGACCGCCCGGTCAGT |
|
CE1635 |
hisE |
-23 |
5.1 |
AACAACCGCACGATCGGTATGT |
|
CE0667 |
paaA |
-128 |
6.1 |
ACTGACCGGGCGGTCGGTTAGT |
|
CE0677 |
paaZ |
-121 |
5.8 |
ACTGACCGGCCGTTCGGTAACT |
|
CE0663 |
paaK |
-176 |
5.4 |
ACTTACCGACTGGTCAGTTGGT |
|
CE0666 |
paaI |
-58 |
5.1 |
TACTACCGTCCATTCGGTAAGT |
|
CE0676 |
paaY |
-47 |
6 |
AGTTACCGAACGGCCGGTCAGT |
|
Kocuria rhizophila DC2201
|
|
KRH_02200 |
paaZ |
-48 |
4.8 |
ACTGACCGATCGTTCGGCTAAC |
|
KRH_02310 |
paaT |
-85 |
4.8 |
ACGTCAAGACCAATCGGTCGGT |
|
KRH_02160 |
paaI |
-38 |
4.7 |
ACTGACCGATCGTTCTGAAAAT |
|
KRH_02150 |
paaA |
-210 |
5.6 |
ATTTTCAGAACGATCGGTCAGT |
|
KRH_02150 |
paaA |
-67 |
5 |
TCTGAACGAGCGGTCAGTTATT |
|
KRH_02160 |
paaI |
-181 |
4.8 |
AATAACTGACCGCTCGTTCAGA |
|
KRH_02210 |
paaY |
-268 |
5.5 |
GTTAGCCGAACGATCGGTCAGT |
|
Mycobacterium abscessus ATCC 19977
|
|
MAB_0901c |
paaR |
-92 |
5.9 |
AATAACCGATCGTTCGGTCGGT |
|
MAB_0900c |
paaZ |
-35 |
5.4 |
ACCGAACGAATGGACGGTTGGT |
|
MAB_0902 |
paaJ |
-44 |
6.2 |
ACCGACCGAACGATCGGTTATT |
|
MAB_0906 |
paaA |
-37 |
6.2 |
AATAACCGAACATTCGGTCGGT |
|
Nakamurella multipartita DSM 44233
|
|
Namu_2491 |
paaA |
-70 |
6 |
TCTTACTGACCGTTCGGTCAGT |
|
Namu_2483 |
paaR |
-43 |
6.1 |
ACTGACCGAATGATCGGTCAGC |
|
Nocardia farcinica IFM 10152
|
|
nfa21570 |
paaJ |
-49 |
5.8 |
ACTGACCGAATGTTCGGTAATA |
|
nfa21560 |
paaR |
-81 |
6.1 |
TATTACCGAACATTCGGTCAGT |
|
nfa21550 |
paaZ |
-36 |
5.1 |
AATTACCGACCGAATGTTCAGT |
|
Rhodococcus erythropolis PR4
|
|
RER_55540 |
paaR |
-80 |
5.9 |
AATAACCGAACATTCGGTCGTT |
|
RER_55550 |
paaZ |
-32 |
5.4 |
ACCGACCGAACGTACGGTGAGA |
|
RER_55530 |
paaF |
29 |
5.7 |
AACGACCGAATGTTCGGTTATT |
|
RER_55500 |
paaA |
-35 |
5 |
ACCAACCGATCATTCGGTAATA |
|
RER_44780 |
paaT |
-178 |
4.6 |
ACCTACCGATCATTCGGTTGCC |
|
Rhodococcus opacus B4
|
|
ROP_25860 |
paaJ |
-148 |
5.1 |
TTTCACCGTACGTTCGGTCGGT |
|
ROP_25860 |
paaJ |
-53 |
5.3 |
ACCGACCGAAGATTCGGTTATT |
|
ROP_25820 |
paaA |
23 |
5 |
ACCAACCGATCATTCGGTAATA |
|
ROP_25870 |
paaZ |
-127 |
5.6 |
AATAACCGAATCTTCGGTCGGT |
|
ROP_25870 |
paaZ |
-32 |
5.1 |
ACCGACCGAACGTACGGTGAAA |
|
ROP_23860 |
paaR |
-80 |
4.6 |
CTGAACCGAACCTTCGGTCGGC |
|
ROP_17540 |
paaT |
-122 |
5.5 |
ACCAACCGAACGTACGGTTATA |
|
ROP_17540 |
paaT |
-39 |
5.4 |
CCTGACCGAACAATCGGTCGAG |
|
Rhodococcus sp. RHA1
|
|
RHA1_ro02633 |
paaR |
-80 |
4.7 |
TTCAACCGAACCTTCGGTCGGC |
|
RHA1_ro02864 |
paaZ |
-32 |
5.1 |
ACCGACCGAACGTACGGTGAAA |
|
RHA1_ro02864 |
paaZ |
-128 |
5.6 |
AATAACCGAATCTTCGGTCGGT |
|
RHA1_ro02863 |
paaJ |
-149 |
5.1 |
TTTCACCGTACGTTCGGTCGGT |
|
RHA1_ro02863 |
paaJ |
-53 |
5.3 |
ACCGACCGAAGATTCGGTTATT |
|
RHA1_ro02859 |
paaA |
-34 |
5 |
ACCAACCGATCATTCGGTAATA |
|
RHA1_ro02082 |
paaT |
-124 |
5.5 |
ACCAACCGAACGTACGGTTATA |
|
RHA1_ro02082 |
paaT |
-40 |
4.8 |
CCTGACCGAACAGTCGTTCGCA |
|
Saccharomonospora viridis DSM 43017
|
|
Svir_26550 |
paaH |
-116 |
5.7 |
ACTGACCGAATGGACGGTTACT |
|
Svir_26540 |
paaZ |
-39 |
5.7 |
ACTTCCTGAACGTTCGGTTGGT |
|
Svir_26560 |
paaI |
-42 |
5.7 |
AGTAACCGTCCATTCGGTCAGT |
|
Saccharopolyspora erythraea NRRL 2338
|
|
SACE_3542 |
paaK |
-232 |
5.2 |
TTTTACCGACCGTTCGTTCGGT |
|
SACE_3542 |
paaK |
-94 |
5.5 |
AATAACCGACTACTCGGTCAGT |
|
SACE_3543 |
paaZ |
-186 |
5.6 |
ACTGACCGAGTAGTCGGTTATT |
|
SACE_3543 |
paaZ |
-52 |
5.8 |
CGTTACCGAACGAACGGTCGGT |
|
Streptomyces avermitilis MA-4680
|
|
SAV_4354 |
paaA |
-52 |
5.9 |
GCGAACCGAACGATCGGTCGGT |
|
SAV_1257 |
paaK |
-56 |
4.7 |
GGCTACCGAATGATCGGTCGCC |
|
SAV_4359 |
paaH |
-74 |
6 |
AGTAACCGAACGATCGGTCGGG |
|
SAV_4358 |
paaZ |
-96 |
5.2 |
CCCGACCGATCGTTCGGTTACT |
|
SAV_4362 |
bkdA |
-77 |
5.5 |
GACGACCGAACAATCGGTAGGT |
|
Streptomyces coelicolor A3(2)
|
|
SCO3831 |
bkdA |
-78 |
5.5 |
GACGACCGAACAATCGGTAGGT |
|
SCO7471 |
paaA |
-157 |
5.3 |
CCCGACCGACCATTCGGTTAGC |
|
SCO7471 |
paaA |
-34 |
5.3 |
ACCGAACGAATGGTCGGTTGGG |
|
SCO7470 |
paaI |
-152 |
5 |
CCCAACCGACCATTCGTTCGGT |
|
SCO7470 |
paaI |
-29 |
5.5 |
GCTAACCGAATGGTCGGTCGGG |
|
SCO3834 |
paaH |
-74 |
6 |
AGTAACCGAACGATCGGTCGGG |
|
SCO3835 |
paaZ |
-106 |
5.2 |
CCCGACCGATCGTTCGGTTACT |
|
Streptomyces griseus subsp. griseus NBRC 13350
|
|
SGR_3741 |
paaA |
-34 |
6.1 |
AGGAACCGAACGATCGGTCGGT |
|
SGR_6814 |
paaK |
-77 |
5 |
ATCGACCGAATGATCGGTCGCC |
|
SGR_3746 |
paaR |
-106 |
6 |
AGTAACCGAACGATCGGTCGGG |
|
SGR_3745 |
paaZ |
-72 |
5.2 |
CCCGACCGATCGTTCGGTTACT |
|
SGR_3748 |
bkdA |
-127 |
5.6 |
CGCGACCGAACAATCGGTAGGT |
Export
|
Regulatory Sites
|
[ FASTA format ]
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