Regulon of PaaR in Rhodococcus opacus B4
| Regulator type: | Transcription factor |
| TF locus tag: | ROP_23860 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Actinobacteria |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -80
Score: 4.6 Sequence: CTGAACCGAACCTTCGGTCGGC
Locus tag: ROP_23860
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Position: -127
Score: 5.6 Sequence: AATAACCGAATCTTCGGTCGGT
Position: -32
Score: 5.1 Sequence: ACCGACCGAACGTACGGTGAAA
Locus tag: ROP_25870
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: ROP_25880
Name: ethD Funciton: Possible ethyl tert-butyl ether degradation protein EthD
Locus tag: ROP_25890
Name: paaI Funciton: Phenylacetic acid degradation protein PaaI, thioesterase |
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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ethD
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Possible ethyl tert-butyl ether degradation protein EthD
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paaI
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Phenylacetic acid degradation protein PaaI, thioesterase
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Position: 23
Score: 5 Sequence: ACCAACCGATCATTCGGTAATA
Locus tag: ROP_25820
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: ROP_25810
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: ROP_25800
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: ROP_25790
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: ROP_25780
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: ROP_25770
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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paaA
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Phenylacetate-CoA oxygenase, PaaA subunit
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paaB
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Phenylacetate-CoA oxygenase, PaaB subunit
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paaC
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Phenylacetate-CoA oxygenase, PaaC subunit
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paaD
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Phenylacetate-CoA oxygenase, PaaD subunit
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paaE
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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Position: -148
Score: 5.1 Sequence: TTTCACCGTACGTTCGGTCGGT
Position: -53
Score: 5.3 Sequence: ACCGACCGAAGATTCGGTTATT
Locus tag: ROP_25860
Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: ROP_25850
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: ROP_25840
Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: ROP_25830
Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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paaJ
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Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
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paaF
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaH
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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paaG
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -122
Score: 5.5 Sequence: ACCAACCGAACGTACGGTTATA
Position: -39
Score: 5.4 Sequence: CCTGACCGAACAATCGGTCGAG
Locus tag: ROP_17540
Name: paaT Funciton: Predicted phylacetic acid transporter PaaT |
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paaT
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Predicted phylacetic acid transporter PaaT
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |