Regulon of AmtR in Corynebacterium efficiens YS-314
| Regulator type: | Transcription factor |
| TF locus tag: | CE0939 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Nitrogen metabolism |
| Effector: | GlnK-AMP, signal transduction protein |
| Regulog: | AmtR - Corynebacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 29 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - AmtR
- By taxonomy - Corynebacteriaceae
- By TF family - TetR
- By effector - GlnK-AMP, signal transduction protein
- By pathway - Nitrogen metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -107
Score: 5.4 Sequence: TTTTCCTATAGGTTGATCGAAAAT
Position: -40
Score: 5.1 Sequence: ATTATCGAATGATTAATAGAAACC
Locus tag: CE0158
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: CE0159
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -113
Score: 5.1 Sequence: GGTTTCTATTAATCATTCGATAAT
Position: -46
Score: 5.7 Sequence: ATTTTCGATCAACCTATAGGAAAA
Locus tag: CE0157
Name: hkm Funciton: Predicted sensor histidine kinase of two-component system |
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hkm
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Predicted sensor histidine kinase of two-component system
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Position: -110
Score: 4.9 Sequence: TTTACCTATTGAGCTATTGATAAA
Locus tag: CE1844
Name: gluA Funciton: Glutamate ABC transporter, ATP-binding protein
Locus tag: CE1845
Name: gluB Funciton: Glutamate ABC transporter, substrate-binding protein
Locus tag: CE1846
Name: gluC Funciton: Glutamate ABC transporter, permease protein 1
Locus tag: CE1847
Name: gluD Funciton: Glutamate ABC transporter, permease protein 2 |
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gluA
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Glutamate ABC transporter, ATP-binding protein
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gluB
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Glutamate ABC transporter, substrate-binding protein
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gluC
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Glutamate ABC transporter, permease protein 1
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gluD
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Glutamate ABC transporter, permease protein 2
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Position: -99
Score: 5.3 Sequence: TTAAACTATTGACCGATAGAAACA
Position: -65
Score: 5.1 Sequence: GTTATCTGTTATGCAATAGAAAAT
Locus tag: CE1701
Name: amtA Funciton: Ammonium transporter
Locus tag: CE1700
Name: ocd Funciton: Ornithine cyclodeaminase (EC 4.3.1.12)
Locus tag: CE1699
Name: soxA Funciton: Sarcosine oxidase |
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amtA
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Ammonium transporter
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ocd
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Ornithine cyclodeaminase (EC 4.3.1.12)
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soxA
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Sarcosine oxidase
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Position: -117
Score: 5.9 Sequence: ATTACCTATCGATCGATAGATAAA
Locus tag: CE0711
Name: uctT Funciton: Urea carboxylase-related transporter, Amino acid permease family
Locus tag: CE0710
Name: ucaB Funciton: Allophanate hydrolase (EC 3.5.1.54) |
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uctT
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Urea carboxylase-related transporter, Amino acid permease family
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ucaB
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Allophanate hydrolase (EC 3.5.1.54)
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Position: -72
Score: 5.3 Sequence: TAATTCTATAGATCAATAGAATTA
Position: -27
Score: 5.7 Sequence: AGTTTCTATCACTCAATAGAAAAG
Locus tag: CE2850
Name: crnT Funciton: Creatinine transporter |
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crnT
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Creatinine transporter
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Position: -25
Score: 4.7 Sequence: TCTAACTATTGACTTATAGTTATT
Locus tag: CE0993
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: CE0994
Name: ureB Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: CE0995
Name: ureC Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: CE0996
Name: ureE Funciton: Urease accessory protein UreE
Locus tag: CE0997
Name: ureF Funciton: Urease accessory protein UreF
Locus tag: CE0998
Name: ureG Funciton: Urease accessory protein UreG
Locus tag: CE0999
Name: ureD Funciton: Urease accessory protein UreD |
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ureA
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Urease, gamma subunit (EC 3.5.1.5)
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ureB
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Urease beta subunit (EC 3.5.1.5)
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ureC
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Urease alpha subunit (EC 3.5.1.5)
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ureE
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Urease accessory protein UreE
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ureF
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Urease accessory protein UreF
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ureG
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Urease accessory protein UreG
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ureD
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Urease accessory protein UreD
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Position: -102
Score: 5.6 Sequence: ATTATCGGTCGATCTATAGATAAA
Locus tag: CE0715
Name: amt1 Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: CE0714
Name: amt2 Funciton: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
Locus tag: CE0713
Name: ucaA Funciton: Urea carboxylase (EC 6.3.4.6) |
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amt1
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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amt2
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Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
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ucaA
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Urea carboxylase (EC 6.3.4.6)
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Position: -147
Score: 5.5 Sequence: AGTTTTGATAGATCGACAGATAAT
Locus tag: CE2104
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -47
Score: 4.6 Sequence: TAAAACTATTAACCGTTAGGTATA
Locus tag: CE1982
Name: gdh Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
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gdh
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NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
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Position: -168
Score: 5.3 Sequence: GAATTCTATCGACCTATCGAAAGT
Locus tag: CE1968
Name: amtB Funciton: Ammonium transporter |
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amtB
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Ammonium transporter
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Position: -65
Score: 5.6 Sequence: ATTACCTATAGCTTTATAGAAACA
Position: -39
Score: 5.1 Sequence: TAAACCTGTCGATCTATAGAAATC
Locus tag: CE1000
Name: urtA Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: CE1001
Name: urtB Funciton: Urea ABC transporter, permease protein 1
Locus tag: CE1003
Name: urtC Funciton: Urea ABC transporter, permease protein 2 |
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urtA
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Urea ABC transporter, substrate-binding protein
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urtB
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Urea ABC transporter, permease protein 1
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urtC
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Urea ABC transporter, permease protein 2
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |