Regulon of RutR in Cellvibrio japonicus Ueda107
| Regulator type: | Transcription factor |
| TF locus tag: | CJA_0541 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -201
Score: 4.8 Sequence: ACCTGACTGCACGGACAAAA
Position: -77
Score: 4.2 Sequence: AATTGTCTATTTGGCCAGTC
Locus tag: CJA_0546
Name: xdhA Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
Locus tag: CJA_0547
Name: xdhB Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: CJA_0548
Name: xdhC Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
Locus tag: CJA_0549
Name: pucL Funciton: Uricase (EC 1.7.3.3)
Locus tag: CJA_0550
Name: pucM Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17)
Locus tag: CJA_0551
Name: guaD Funciton: Guanine deaminase (EC 3.5.4.3)
Locus tag: CJA_0552
Name: COG3748 Funciton: Predicted inner membrane protein |
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xdhA
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Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
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xdhB
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Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
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xdhC
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XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
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pucL
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Uricase (EC 1.7.3.3)
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pucM
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Hydroxyisourate hydrolase (EC 3.5.2.17)
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guaD
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Guanine deaminase (EC 3.5.4.3)
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COG3748
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Predicted inner membrane protein
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Position: -165
Score: 4.5 Sequence: GACTGGCCAAATAGACAATT
Position: -41
Score: 4.4 Sequence: TTTTGTCCGTGCAGTCAGGT
Locus tag: CJA_0545
Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: CJA_0544
Name: ppuC Funciton: Predicted ABC transporter, permease protein
Locus tag: CJA_0543
Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor
Locus tag: CJA_0542
Name: ppuB Funciton: Predicted ABC transporter, substrate-binding protein precursor
Locus tag: CJA_0541
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: CJA_0540
Name: ssnA Funciton: Predicted chlorohydrolase/aminohydrolase |
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ppuA
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Predicted ABC transporter, ATP-binding protein
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ppuC
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Predicted ABC transporter, permease protein
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ppuD
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Predicted ABC transporter, inner membrane protein precursor
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ppuB
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Predicted ABC transporter, substrate-binding protein precursor
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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ssnA
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Predicted chlorohydrolase/aminohydrolase
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Position: -70
Score: 4.4 Sequence: ATCCATCCAAATGGTCAATT
Locus tag: CJA_0583
Name: nupP Funciton: Predicted purine nucleoside permease |
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nupP
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Predicted purine nucleoside permease
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |