Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Cellvibrio japonicus Ueda107

Properties
Regulator type: Transcription factor
TF locus tag: CJA_0541
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes 14
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -201
Score: 4.8
Sequence: ACCTGACTGCACGGACAAAA
Position: -77
Score: 4.2
Sequence: AATTGTCTATTTGGCCAGTC
Locus tag: CJA_0546
Name: xdhA
Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
Locus tag: CJA_0547
Name: xdhB
Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: CJA_0548
Name: xdhC
Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
Locus tag: CJA_0549
Name: pucL
Funciton: Uricase (EC 1.7.3.3)
Locus tag: CJA_0550
Name: pucM
Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17)
Locus tag: CJA_0551
Name: guaD
Funciton: Guanine deaminase (EC 3.5.4.3)
Locus tag: CJA_0552
Name: COG3748
Funciton: Predicted inner membrane protein
xdhA
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
xdhB
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
xdhC
XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
pucL
Uricase (EC 1.7.3.3)
pucM
Hydroxyisourate hydrolase (EC 3.5.2.17)
guaD
Guanine deaminase (EC 3.5.4.3)
COG3748
Predicted inner membrane protein

Position: -165
Score: 4.5
Sequence: GACTGGCCAAATAGACAATT
Position: -41
Score: 4.4
Sequence: TTTTGTCCGTGCAGTCAGGT
Locus tag: CJA_0545
Name: ppuA
Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: CJA_0544
Name: ppuC
Funciton: Predicted ABC transporter, permease protein
Locus tag: CJA_0543
Name: ppuD
Funciton: Predicted ABC transporter, inner membrane protein precursor
Locus tag: CJA_0542
Name: ppuB
Funciton: Predicted ABC transporter, substrate-binding protein precursor
Locus tag: CJA_0541
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: CJA_0540
Name: ssnA
Funciton: Predicted chlorohydrolase/aminohydrolase
ppuA
Predicted ABC transporter, ATP-binding protein
ppuC
Predicted ABC transporter, permease protein
ppuD
Predicted ABC transporter, inner membrane protein precursor
ppuB
Predicted ABC transporter, substrate-binding protein precursor
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
ssnA
Predicted chlorohydrolase/aminohydrolase

Position: -70
Score: 4.4
Sequence: ATCCATCCAAATGGTCAATT
Locus tag: CJA_0583
Name: nupP
Funciton: Predicted purine nucleoside permease
nupP
Predicted purine nucleoside permease
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