Regulon of RutR in Hahella chejuensis KCTC 2396
| Regulator type: | Transcription factor |
| TF locus tag: | HCH_01108 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -157
Score: 5.2 Sequence: ACCTGACCATGTAGACAAGT
Locus tag: HCH_01099
Name: xdhA Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
Locus tag: HCH_01098
Name: xdhB Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: HCH_01097
Name: xdhC Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
Locus tag: HCH_01096
Name: allB Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: HCH_01095
Name: allC Funciton: Allantoicase (EC 3.5.3.4)
Locus tag: HCH_01094
Name: pucL Funciton: Uricase (EC 1.7.3.3)
Locus tag: HCH_01093
Name: pucM Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17)
Locus tag: HCH_01092
Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: HCH_01091
Name: guaD Funciton: Guanine deaminase (EC 3.5.4.3)
Locus tag: HCH_01090
Name: COG3748 Funciton: Predicted inner membrane protein |
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xdhA
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Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
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xdhB
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Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
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xdhC
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XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
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allB
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Allantoinase (EC 3.5.2.5)
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allC
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Allantoicase (EC 3.5.3.4)
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pucL
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Uricase (EC 1.7.3.3)
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pucM
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Hydroxyisourate hydrolase (EC 3.5.2.17)
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allA
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Ureidoglycolate hydrolase (EC 3.5.3.19)
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guaD
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Guanine deaminase (EC 3.5.4.3)
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COG3748
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Predicted inner membrane protein
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Position: -235
Score: 5.2 Sequence: AGTTGATCAATTGGTCAAAT
Position: -208
Score: 5 Sequence: AACTGACCAGTTGGCCAAAA
Locus tag: HCH_01101
Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: HCH_01102
Name: ppuC Funciton: Predicted ABC transporter, permease protein
Locus tag: HCH_01103
Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor
Locus tag: HCH_01105
Name: ppuB Funciton: Predicted ABC transporter, substrate-binding protein precursor
Locus tag: HCH_01106
Name: ssnA Funciton: Predicted chlorohydrolase/aminohydrolase
Locus tag: HCH_01108
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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ppuA
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Predicted ABC transporter, ATP-binding protein
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ppuC
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Predicted ABC transporter, permease protein
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ppuD
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Predicted ABC transporter, inner membrane protein precursor
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ppuB
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Predicted ABC transporter, substrate-binding protein precursor
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ssnA
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Predicted chlorohydrolase/aminohydrolase
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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Position: -111
Score: 5.1 Sequence: TCTTGACTACTTGGTCAGAA
Locus tag: HCH_02310
Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: HCH_02311
Name: ppuC Funciton: Predicted ABC transporter, permease protein
Locus tag: HCH_02312
Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor |
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ppuA
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Predicted ABC transporter, ATP-binding protein
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ppuC
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Predicted ABC transporter, permease protein
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ppuD
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Predicted ABC transporter, inner membrane protein precursor
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Position: -106
Score: 5 Sequence: ACCTGTCCGGCTGGTCATAA
Locus tag: HCH_01504
Name: ppuB Funciton: Predicted ABC transporter, substrate-binding protein precursor
Locus tag: HCH_01503
Name: add Funciton: Adenosine deaminase (EC 3.5.4.4) |
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ppuB
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Predicted ABC transporter, substrate-binding protein precursor
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add
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Adenosine deaminase (EC 3.5.4.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |