Regulon of RutR in Hahella chejuensis KCTC 2396

Properties
Regulator type:	Transcription factor
TF locus tag:	HCH_01108
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	21
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Oceanospirillales/Alteromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -157 Score: 5.2 Sequence: ACCTGACCATGTAGACAAGT Locus tag: HCH_01099 Name: xdhA Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) Locus tag: HCH_01098 Name: xdhB Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: HCH_01097 Name: xdhC Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) Locus tag: HCH_01096 Name: allB Funciton: Allantoinase (EC 3.5.2.5) Locus tag: HCH_01095 Name: allC Funciton: Allantoicase (EC 3.5.3.4) Locus tag: HCH_01094 Name: pucL Funciton: Uricase (EC 1.7.3.3) Locus tag: HCH_01093 Name: pucM Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17) Locus tag: HCH_01092 Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19) Locus tag: HCH_01091 Name: guaD Funciton: Guanine deaminase (EC 3.5.4.3) Locus tag: HCH_01090 Name: COG3748 Funciton: Predicted inner membrane protein
	HCH_01099	xdhA	Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
	HCH_01098	xdhB	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
	HCH_01097	xdhC	XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
	HCH_01096	allB	Allantoinase (EC 3.5.2.5)
	HCH_01095	allC	Allantoicase (EC 3.5.3.4)
	HCH_01094	pucL	Uricase (EC 1.7.3.3)
	HCH_01093	pucM	Hydroxyisourate hydrolase (EC 3.5.2.17)
	HCH_01092	allA	Ureidoglycolate hydrolase (EC 3.5.3.19)
	HCH_01091	guaD	Guanine deaminase (EC 3.5.4.3)
	HCH_01090	COG3748	Predicted inner membrane protein
Position: -235 Score: 5.2 Sequence: AGTTGATCAATTGGTCAAAT Position: -208 Score: 5 Sequence: AACTGACCAGTTGGCCAAAA Locus tag: HCH_01101 Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein Locus tag: HCH_01102 Name: ppuC Funciton: Predicted ABC transporter, permease protein Locus tag: HCH_01103 Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor Locus tag: HCH_01105 Name: ppuB Funciton: Predicted ABC transporter, substrate-binding protein precursor Locus tag: HCH_01106 Name: ssnA Funciton: Predicted chlorohydrolase/aminohydrolase Locus tag: HCH_01108 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	HCH_01101	ppuA	Predicted ABC transporter, ATP-binding protein
	HCH_01102	ppuC	Predicted ABC transporter, permease protein
	HCH_01103	ppuD	Predicted ABC transporter, inner membrane protein precursor
	HCH_01105	ppuB	Predicted ABC transporter, substrate-binding protein precursor
	HCH_01106	ssnA	Predicted chlorohydrolase/aminohydrolase
	HCH_01108	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -111 Score: 5.1 Sequence: TCTTGACTACTTGGTCAGAA Locus tag: HCH_02310 Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein Locus tag: HCH_02311 Name: ppuC Funciton: Predicted ABC transporter, permease protein Locus tag: HCH_02312 Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor
	HCH_02310	ppuA	Predicted ABC transporter, ATP-binding protein
	HCH_02311	ppuC	Predicted ABC transporter, permease protein
	HCH_02312	ppuD	Predicted ABC transporter, inner membrane protein precursor
Position: -106 Score: 5 Sequence: ACCTGTCCGGCTGGTCATAA Locus tag: HCH_01504 Name: ppuB Funciton: Predicted ABC transporter, substrate-binding protein precursor Locus tag: HCH_01503 Name: add Funciton: Adenosine deaminase (EC 3.5.4.4)
	HCH_01504	ppuB	Predicted ABC transporter, substrate-binding protein precursor
	HCH_01503	add	Adenosine deaminase (EC 3.5.4.4)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of RutR in Hahella chejuensis KCTC 2396

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --