Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Caulobacter segnis ATCC 21756

Properties
Regulator type: Transcription factor
TF locus tag: Cseg_1350
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Caulobacterales
Statistics of regulated genes:
- Genes 30
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 70 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -34
Score: 5.1
Sequence: ATTCAAACTAATGTTTTAAC
Locus tag: Cseg_0226
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -166
Score: 4.8
Sequence: ACTGAAACTATCGTTCGAAT
Position: -52
Score: 4.8
Sequence: TCTCAAACGGTTGTTCAAGC
Locus tag: Cseg_0771
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Cseg_0772
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -68
Score: 4.8
Sequence: CGACGAACGCGCGTTTGACG
Locus tag: Cseg_0869
Name: null
Funciton: Bll1370 protein
Bll1370 protein

Position: -28
Score: 5.3
Sequence: ATTCAAACAAACGTTTAGGG
Locus tag: Cseg_3639
Name: null
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family
Oxidoreductase, short-chain dehydrogenase/reductase family

Position: -28
Score: 5.2
Sequence: ATCCGAACAACCGTTCGAAA
Locus tag: Cseg_1354
Name: null
Funciton: Bll6692 protein
Bll6692 protein

Position: -113
Score: 5
Sequence: CGGCGAACGAGCGTTTGAAT
Locus tag: Cseg_1384
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
Locus tag: Cseg_1383
Name: null
Funciton: DSBA oxidoreductase
Locus tag: Cseg_1382
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
Acyl-CoA dehydrogenase family protein
DSBA oxidoreductase
Acyl-CoA dehydrogenase family protein

Position: -27
Score: 5.6
Sequence: CCTCAAACAATTGTTTGAGG
Locus tag: Cseg_0190
Name: null
Funciton: HAD-superfamily hydrolase
Locus tag: Cseg_0191
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
HAD-superfamily hydrolase
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)

Position: -40
Score: 5.6
Sequence: ATTCAAACTCGCGTTTGAAT
Locus tag: Cseg_0192
Name: null
Funciton: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase

Position: -45
Score: 5.4
Sequence: GGTCATACGATCGTTTGAAA
Locus tag: Cseg_3348
Name: echH
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
echH
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)

Position: -26
Score: 5.1
Sequence: TTTCAAACGATCGTTAGCCT
Locus tag: Cseg_0614
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Cseg_0615
Name: null
Funciton: alpha/beta hydrolase fold protein
paaI
Phenylacetic acid degradation protein paaI
alpha/beta hydrolase fold protein

Position: -30
Score: 4.9
Sequence: CCCCCAACGATCGTTTGAAT
Locus tag: Cseg_2255
Name: null
Funciton: acetyl-CoA acetyltransferase
Locus tag: Cseg_2254
Name: null
Funciton: phosphoglycerate mutase family protein
Locus tag: Cseg_2253
Name: null
Funciton: YjeF protein, function unknown
acetyl-CoA acetyltransferase
phosphoglycerate mutase family protein
YjeF protein, function unknown

Position: -31
Score: 5.1
Sequence: AACCAAACACGCGTTTGAGG
Locus tag: Cseg_1333
Name: null
Funciton: Oxidoreductase, short chain dehydrogenase/reductase family
Locus tag: Cseg_1332
Name: fadL
Funciton: Long-chain fatty acid transport protein
Oxidoreductase, short chain dehydrogenase/reductase family
fadL
Long-chain fatty acid transport protein

Position: -31
Score: 5.3
Sequence: ATCCAAACAAATGTTTGGGA
Locus tag: Cseg_3353
Name: null
Funciton: aldehyde dehydrogenase
aldehyde dehydrogenase

Position: -52
Score: 4.9
Sequence: AAGAAAACAATTGTTTGGCT
Position: -34
Score: 5.2
Sequence: CTTAAAACACCTGTTTGGCC
Locus tag: Cseg_3655
Name: null
Funciton: Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)
Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)

Position: -46
Score: 5.9
Sequence: CTTCAAACAAGTGTTTGACA
Locus tag: Cseg_3689
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -87
Score: 5.2
Sequence: TTCCAAACGGTCGTTCGACC
Locus tag: Cseg_1597
Name: null
Funciton: Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.99.13)
Locus tag: Cseg_1598
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.99.13)
Acyl-CoA dehydrogenase family protein

Position: -27
Score: 5.1
Sequence: TGTCAAACGAGTGTTCGGGA
Locus tag: Cseg_2635
Name: null
Funciton: Beta-lactamase class C and other penicillin binding proteins
Locus tag: Cseg_2634
Name: null
Funciton: NADP-dependent quinone oxidoreductase, putative
Locus tag: Cseg_2633
Name: fabL
Funciton: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (fabL) (NADPH) (EC 1.3.1.9)
Beta-lactamase class C and other penicillin binding proteins
NADP-dependent quinone oxidoreductase, putative
fabL
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (fabL) (NADPH) (EC 1.3.1.9)

Position: -39
Score: 5.3
Sequence: CTTCAAACAAGCGTTCAAGA
Locus tag: Cseg_0314
Name: null
Funciton: Short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR

Position: -64
Score: 5.2
Sequence: GTCAAAACAGATGTTTGACA
Locus tag: Cseg_3758
Name: null
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD