Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Caulobacter crescentus CB15

Properties
Regulator type: Transcription factor
TF locus tag: CC2080
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Caulobacterales
Statistics of regulated genes:
- Genes 34
- Operons 22
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 70 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -34
Score: 5.4
Sequence: ATTCAAACTAACGTTTAACG
Locus tag: CC3462
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
CC3462
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -45
Score: 5.2
Sequence: TGTCAAACAACCGTTCAAAC
Locus tag: CC3189
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: CC3188
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
CC3189
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
CC3188
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -31
Score: 5.1
Sequence: AACCAAACACACGTTTGAGG
Locus tag: CC2093
Name: null
Funciton: Oxidoreductase, short chain dehydrogenase/reductase family
Locus tag: CC2094
Name: fadL
Funciton: Long-chain fatty acid transport protein
CC2093
Oxidoreductase, short chain dehydrogenase/reductase family
CC2094
fadL
Long-chain fatty acid transport protein
Position: -70
Score: 4.8
Sequence: GGGCGAACAGATGTTTGACT
Locus tag: CC3089
Name: null
Funciton: Bll1370 protein
CC3089
Bll1370 protein
Position: -40
Score: 4.5
Sequence: CATCTAACAAGTGTTTGATC
Locus tag: CC1111
Name: null
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: CC1110
Name: null
Funciton: acyl-CoA dehydrogenase family protein
Locus tag: CC1109
Name: null
Funciton: COGs COG3777
CC1111
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
CC1110
acyl-CoA dehydrogenase family protein
CC1109
COGs COG3777
Position: -28
Score: 5.3
Sequence: ATTCAAACAAACGTTTAGGG
Locus tag: CC3076
Name: null
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family
CC3076
Oxidoreductase, short-chain dehydrogenase/reductase family
Position: -46
Score: 4.4
Sequence: ATTCGAACGCCCGTAAGACT
Locus tag: CC2080
Name: psrA
Funciton: Transcriptional regulator for fatty acid degradation PsrA, TetR family
CC2080
psrA
Transcriptional regulator for fatty acid degradation PsrA, TetR family
Position: -29
Score: 5.1
Sequence: ATCCGAACACCTGTTCGAAA
Locus tag: CC2074
Name: null
Funciton: Bll6692 protein
CC2074
Bll6692 protein
Position: -89
Score: 5.4
Sequence: ATGCGAACGATCGTTTGAAT
Locus tag: CC2049
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
Locus tag: CC2050
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
CC2049
Acyl-CoA dehydrogenase family protein
CC2050
Acyl-CoA dehydrogenase family protein
Position: -25
Score: 5.5
Sequence: GCTCAAACAAGCGTTTGAGG
Locus tag: CC0244
Name: null
Funciton: HAD-superfamily hydrolase
Locus tag: CC0245
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
CC0244
HAD-superfamily hydrolase
CC0245
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -69
Score: 5.2
Sequence: GGCAAAACAAGCGTTTGACG
Locus tag: CC0427
Name: null
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
CC0427
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -99
Score: 5
Sequence: CCTCAAACGCATGTTTGCAT
Locus tag: CC1321
Name: fadD2
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
CC1321
fadD2
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -26
Score: 5
Sequence: TTTCAAACGCTTGTTAGCCT
Locus tag: CC3309
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: CC3308
Name: null
Funciton: alpha/beta hydrolase fold protein
CC3309
paaI
Phenylacetic acid degradation protein paaI
CC3308
alpha/beta hydrolase fold protein
Position: -39
Score: 5.1
Sequence: GGTCATACGATCGTTTAAAA
Locus tag: CC0947
Name: echH
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
CC0947
echH
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Position: -41
Score: 5.5
Sequence: ATTCAAACTGCTGTTTGAAT
Locus tag: CC0246
Name: null
Funciton: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
CC0246
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
Position: -30
Score: 4.8
Sequence: CGCCCAACGAACGTTTGAAT
Locus tag: CC1967
Name: null
Funciton: acetyl-CoA acetyltransferase
Locus tag: CC1966
Name: null
Funciton: phosphoglycerate mutase family protein
Locus tag: CC1965
Name: null
Funciton: YjeF protein, function unknown
CC1967
acetyl-CoA acetyltransferase
CC1966
phosphoglycerate mutase family protein
CC1965
YjeF protein, function unknown
Position: -30
Score: 5.3
Sequence: ATCCAAACAACTGTTCGAGG
Locus tag: CC0942
Name: null
Funciton: aldehyde dehydrogenase
CC0942
aldehyde dehydrogenase
Position: -41
Score: 5.3
Sequence: CTTCAAACAAGCGTTTCAAG
Locus tag: CC3380
Name: null
Funciton: Short-chain dehydrogenase/reductase SDR
CC3380
Short-chain dehydrogenase/reductase SDR
Position: -34
Score: 4.6
Sequence: AAGAAAACAACTGTTTGGGC
Locus tag: CC3087
Name: null
Funciton: Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)
CC3087
Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007)
Position: -47
Score: 5.9
Sequence: CTTCAAACAAGCGTTTGACA
Locus tag: CC0690
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
CC0690
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -86
Score: 5
Sequence: TTCCAAACGGCCGTTCGAGC
Locus tag: CC1310
Name: null
Funciton: Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.99.13)
Locus tag: CC1311
Name: null
Funciton: Acyl-CoA dehydrogenase family protein
CC1310
Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.99.13)
CC1311
Acyl-CoA dehydrogenase family protein
Position: -27
Score: 5.4
Sequence: TCTCAAACAATTGTTTGGGA
Locus tag: CC1568
Name: null
Funciton: Beta-lactamase class C and other penicillin binding proteins
Locus tag: CC1569
Name: null
Funciton: NADP-dependent quinone oxidoreductase, putative
Locus tag: CC1570
Name: fabL
Funciton: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (fabL) (NADPH) (EC 1.3.1.9)
CC1568
Beta-lactamase class C and other penicillin binding proteins
CC1569
NADP-dependent quinone oxidoreductase, putative
CC1570
fabL
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (fabL) (NADPH) (EC 1.3.1.9)
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