Regulon of LiuR in Brucella melitensis 16M
| Regulator type: | Transcription factor |
| TF locus tag: | BMEII0467, BMEI0808 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhizobiales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: 37
Score: 5 Sequence: TATTACGTAAACGTAAGA
Locus tag: BMEI1371
Name: SMc00041 Funciton: hypothetical protein |
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SMc00041
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hypothetical protein
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Position: -112
Score: 5.8 Sequence: ATTGACGTTTACGTAATA
Locus tag: BMEI1521
Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: BMEI1522
Name: echH Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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acdH2
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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echH
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: 10
Score: 5.5 Sequence: TATTACGTTTACGGAAAC
Locus tag: BMEII0460
Name: PF03060 Funciton: Dioxygenases related to 2-nitropropane dioxygenase |
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PF03060
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Dioxygenases related to 2-nitropropane dioxygenase
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Position: -179
Score: 6 Sequence: TCTTACGTTTACGTAAGA
Locus tag: BMEI0137
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: BMEI0138
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: BMEI0139
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: BMEI0140
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: BMEI0141
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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Position: -176
Score: 5.3 Sequence: ATTGACGTGCACGTCAAC
Locus tag: BMEI0096
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: BMEI0097
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: BMEI0098
Name: null Funciton: hypothetical protein
Locus tag: BMEI0099
Name: hbdA Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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hypothetical protein
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hbdA
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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Position: -84
Score: 5.4 Sequence: ATTTACCTTTACGTAAAT
Locus tag: BMEI0304
Name: null Funciton: Hypothetical Cytosolic Protein |
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Hypothetical Cytosolic Protein
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Position: -154
Score: 5.2 Sequence: GTTTACGTTTACGTTTGC
Position: -148
Score: 5.5 Sequence: GTTTACGTTTGCGTAAGC
Locus tag: BMEI1315
Name: PF09917 Funciton: Protein of unknown function, PF09917 |
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PF09917
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Protein of unknown function, PF09917
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Position: -244
Score: 6 Sequence: TTTGACGTTTACGTTAAG
Position: -238
Score: 5.3 Sequence: GTTTACGTTAAGGTAAAA
Locus tag: BMEI1320
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -193
Score: 6.1 Sequence: TTTGACGTTTACGGAAAC
Position: -187
Score: 4.6 Sequence: GTTTACGGAAACGTCAAA
Locus tag: BMEII0495
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: BMEII0496
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: BMEII0497
Name: acdB Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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acdB
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Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -65
Score: 5.3 Sequence: ATTGACTTTTACGTAAAT
Locus tag: BMEI0808
Name: liuR1 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR1
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |