Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Mesorhizobium loti MAFF303099

Properties
Regulator type: Transcription factor
TF locus tag: mlr5623, mll1317
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 84 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 6.5
Sequence: TTTGACGTTTACGTAAAA
Locus tag: mlr7452
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: mlr7453
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
mlr7452
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
mlr7453
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -203
Score: 5.8
Sequence: TTTGACGTTTACGTAAGT
Locus tag: mll4308
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: mll4306
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: mll4305
Name: null
Funciton: Cupin 2 conserved barrel domain protein
Locus tag: mll4304
Name: null
Funciton: hypothetical protein
Locus tag: mll4303
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: mll4302
Name: null
Funciton: hypothetical protein
Locus tag: mll4301
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: mll4300
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
mll4308
mdh
Malate dehydrogenase (EC 1.1.1.37)
mll4306
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
mll4305
Cupin 2 conserved barrel domain protein
mll4304
hypothetical protein
mll4303
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
mll4302
hypothetical protein
mll4301
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
mll4300
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -154
Score: 5.6
Sequence: ATTGACGTAAACGTAAAA
Locus tag: mlr5623
Name: liuR2
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
mlr5623
liuR2
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -69
Score: 5.3
Sequence: GCTTACGTTTGCGTAAGC
Locus tag: mll7718
Name: PF09917
Funciton: Protein of unknown function, PF09917
mll7718
PF09917
Protein of unknown function, PF09917
Position: -115
Score: 6.1
Sequence: ATTGACGTTTACGCAAAC
Locus tag: mlr5624
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: mlr5626
Name: acdL
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: mlr5628
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: mlr5629
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: mlr5630
Name: null
Funciton: Predicted thioesterase
mlr5624
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
mlr5626
acdL
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
mlr5628
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
mlr5629
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
mlr5630
Predicted thioesterase
Position: -127
Score: 5.3
Sequence: ATTGACTTTTACGTAAAT
Locus tag: mll1317
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
mll1317
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise