Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Laribacter hongkongensis HLHK9

Properties
Regulator type: Transcription factor
TF locus tag: LHK_00207
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Various betaproteobacteria
Statistics of regulated genes:
- Genes 17
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -116
Score: 5.6
Sequence: ATATACGTTTACGTTAAC
Position: -110
Score: 5.7
Sequence: GTTTACGTTAACGTCAAT
Position: -33
Score: 5.1
Sequence: GTTTCCGTTTACGTAAAA
Locus tag: LHK_00207
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: LHK_00206
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
LHK_00207
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
LHK_00206
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Position: -60
Score: 6.6
Sequence: ATTGACGTTAACGTAAAC
Position: -54
Score: 4.8
Sequence: GTTAACGTAAACGTATAT
Locus tag: LHK_00208
Name: ivdG
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
LHK_00208
ivdG
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -62
Score: 5.4
Sequence: GTTTACGTTCACGTAAAT
Locus tag: LHK_00209
Name: lcfA
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: LHK_00210
Name: livG
Funciton: Branched-chain amino acid ABC transport system, ATP-binding protein LivG
Locus tag: LHK_00211
Name: livH
Funciton: Branched-chain amino acid ABC transport system, permease protein LivH
Locus tag: LHK_00212
Name: livM
Funciton: Branched-chain amino acid ABC transport system, permease protein LivM
Locus tag: LHK_00213
Name: livK
Funciton: Branched-chain amino acid ABC transport system, substrate-binding protein LivK
Locus tag: LHK_00214
Name: livF
Funciton: Branched-chain amino acid ABC transport system, ATP-binding protein LivF
Locus tag: LHK_00215
Name: paaK
Funciton: Putative phenylacetate-CoA ligase
Locus tag: LHK_00216
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: LHK_00217
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: LHK_00218
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Locus tag: LHK_00219
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: LHK_00220
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
LHK_00209
lcfA
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
LHK_00210
livG
Branched-chain amino acid ABC transport system, ATP-binding protein LivG
LHK_00211
livH
Branched-chain amino acid ABC transport system, permease protein LivH
LHK_00212
livM
Branched-chain amino acid ABC transport system, permease protein LivM
LHK_00213
livK
Branched-chain amino acid ABC transport system, substrate-binding protein LivK
LHK_00214
livF
Branched-chain amino acid ABC transport system, ATP-binding protein LivF
LHK_00215
paaK
Putative phenylacetate-CoA ligase
LHK_00216
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
LHK_00217
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
LHK_00218
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
LHK_00219
ivdD
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
LHK_00220
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Position: -80
Score: 6.1
Sequence: GTTGACGTTCACGTAAAC
Locus tag: LHK_02055
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: LHK_02056
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
LHK_02055
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
LHK_02056
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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