Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Chromobacterium violaceum ATCC 12472

Properties
Regulator type: Transcription factor
TF locus tag: CV1779, CV2087
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Various betaproteobacteria
Statistics of regulated genes:
- Genes 21
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -54
Score: 5.8
Sequence: ATTTACGTTTACGTAATC
Position: -48
Score: 4.8
Sequence: GTTTACGTAATCGTCAAT
Locus tag: CV1780
Name: aacS2
Funciton: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
CV1780
aacS2
Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -66
Score: 6.1
Sequence: GTTGACGTTGACGTAAAC
Position: -60
Score: 5.5
Sequence: GTTGACGTAAACGTCAAG
Locus tag: CV2086
Name: ivdG
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: CV2085
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: CV2084
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: CV2083
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Locus tag: CV2082
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: CV2081
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
CV2086
ivdG
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
CV2085
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
CV2084
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
CV2083
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
CV2082
ivdD
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
CV2081
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Position: -268
Score: 5.8
Sequence: TTTGACGTTGACGTAAAC
Position: -262
Score: 6.2
Sequence: GTTGACGTAAACGTAAAC
Locus tag: CV0303
Name: null
Funciton: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
Locus tag: CV0302
Name: null
Funciton: hypothetical protein
CV0303
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
CV0302
hypothetical protein
Position: -80
Score: 6.5
Sequence: ATTGACGCTTACGTAAAC
Position: -74
Score: 5.3
Sequence: GCTTACGTAAACGTAAGC
Locus tag: CV1766
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: CV1765
Name: null
Funciton: hypothetical protein
Locus tag: CV1764
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: CV1763
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: CV1762
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: CV1761
Name: null
Funciton: FOG: TPR repeat protein
Locus tag: CV1760
Name: null
Funciton: probable transcriptional regulator (AraC/XylS family)
Locus tag: CV1759
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: CV1758
Name: aacS
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
CV1766
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
CV1765
hypothetical protein
CV1764
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
CV1763
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
CV1762
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
CV1761
FOG: TPR repeat protein
CV1760
probable transcriptional regulator (AraC/XylS family)
CV1759
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
CV1758
aacS
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Position: -81
Score: 6.1
Sequence: ATTGACGATTACGTAAAC
Position: -75
Score: 5
Sequence: GATTACGTAAACGTAAAT
Locus tag: CV1779
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
CV1779
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -93
Score: 6.4
Sequence: CTTGACGTTTACGTCAAC
Position: -87
Score: 5.5
Sequence: GTTTACGTCAACGTCAAC
Locus tag: CV2087
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: CV2088
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
CV2087
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
CV2088
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
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