Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Dechloromonas aromatica RCB

Properties
Regulator type: Transcription factor
TF locus tag: Daro_0102
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Various betaproteobacteria
Statistics of regulated genes:
- Genes 16
- Operons 1
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 31 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -51
Score: 6.5
Sequence: GTTGACGTTAACGTAAAC
Position: -45
Score: 5.4
Sequence: GTTAACGTAAACGTAAAT
Locus tag: Daro_0101
Name: paaI
Funciton: Phenylacetic acid degradation-related protein
Locus tag: Daro_0100
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Daro_0099
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Daro_0098
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Daro_0097
Name: null
Funciton: Permease of the drug/metabolite transporter (DMT) superfamily
Locus tag: Daro_0096
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daro_0095
Name: null
Funciton: Protein of unknown function DUF88
Locus tag: Daro_0094
Name: null
Funciton: 2-hydroxychromene-2-carboxylate isomerase
Locus tag: Daro_0093
Name: null
Funciton: Lysine decarboxylase family
Locus tag: Daro_0092
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Daro_0091
Name: null
Funciton: Transcriptional regulator
Locus tag: Daro_0090
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Daro_0089
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Daro_0088
Name: null
Funciton: 5-enolpyruvylshikimate-3-phosphate synthase
Locus tag: Daro_0087
Name: fabG
Funciton: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Locus tag: Daro_0086
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
paaI
Phenylacetic acid degradation-related protein
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
cah
Carbonic anhydrase (EC 4.2.1.1)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Permease of the drug/metabolite transporter (DMT) superfamily
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Protein of unknown function DUF88
2-hydroxychromene-2-carboxylate isomerase
Lysine decarboxylase family
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Transcriptional regulator
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
5-enolpyruvylshikimate-3-phosphate synthase
fabG
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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Regulatory Sites [ FASTA format ] DOWNLOAD