Regulon of NtrC in Alcanivorax borkumensis SK2

Properties
Regulator type:	Transcription factor
TF locus tag:	ABO_2259
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	14
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 63 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -47 Score: 5 Sequence: TGCATAAATTTGGTGCA Locus tag: ABO_2722 Name: ureD Funciton: Urease accessory protein, UreD Locus tag: ABO_2721 Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5) Locus tag: ABO_2720 Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5) Locus tag: ABO_2719 Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) Locus tag: ABO_2718 Name: ureE Funciton: Urease accessory protein, UreE Locus tag: ABO_2717 Name: ureJ Funciton: Urease accessory protein, UreJ Locus tag: ABO_2716 Name: ureF Funciton: Urease accessory protein, UreF Locus tag: ABO_2715 Name: ureG Funciton: Urease accessory protein, UreG
	ABO_2722	ureD	Urease accessory protein, UreD
	ABO_2721	ureA	Urease, gamma subunit (EC 3.5.1.5)
	ABO_2720	ureB	Urease, beta subunit (EC 3.5.1.5)
	ABO_2719	ureC	Urease, alpha subunit (EC 3.5.1.5)
	ABO_2718	ureE	Urease accessory protein, UreE
	ABO_2717	ureJ	Urease accessory protein, UreJ
	ABO_2716	ureF	Urease accessory protein, UreF
	ABO_2715	ureG	Urease accessory protein, UreG
Position: -138 Score: 5.3 Sequence: TGCACCCATATGGTGCA Locus tag: ABO_2260 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: ABO_2259 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	ABO_2260	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	ABO_2259	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -195 Score: 5.2 Sequence: CGCACCATTGCGGTGCA Locus tag: ABO_1930 Name: PF09694 Funciton: Conserved hypothetical protein, nitrogen assimilation associated
	ABO_1930	PF09694	Conserved hypothetical protein, nitrogen assimilation associated
Position: -213 Score: 5 Sequence: TGCCCCATTGTGGTGCG Position: -200 Score: 4.9 Sequence: TGCGCTATAATGGCGCG Locus tag: ABO_2530 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: ABO_2529 Name: amtB Funciton: Ammonium transporter
	ABO_2530	glnK	Nitrogen regulatory protein P-II
	ABO_2529	amtB	Ammonium transporter
Position: -242 Score: 5.2 Sequence: TGCACTATTTTAGTGCC Position: -211 Score: 4.5 Sequence: TGCACTGCATCTGTGCA Locus tag: ABO_2262 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	ABO_2262	glnA	Glutamine synthetase type I (EC 6.3.1.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD