Profile of regulator NtrC in Oceanospirillales/Alteromonadales
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Oceanospirillales/Alteromonadales |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Hahella chejuensis KCTC 2396 | |||||
| HCH_06398 | glnK | -193 | 4.7 | TGCGCTATAATTGTGCC | |
| HCH_06398 | glnK | -265 | 5.1 | TGCACAAAATTTGTGCA | |
| HCH_01036 | glnA | -287 | 5.1 | GGCACCAACTTGGTGCA | |
| HCH_01034 | ntrB | -241 | 4.8 | CGCACCAAAAAAGAGCA | |
| HCH_04519 | urtA | -256 | 4.7 | TGCACCGCTTTGGTTCA | |
| Marinobacter aqueolei | |||||
| Maqu_0523 | glnK | -208 | 5.2 | TGCACCACAACAGTGCA | |
| Maqu_0769 | glnA | -297 | 4.9 | TGCACCATAATTATGCG | |
| Maqu_0769 | glnA | -267 | 5.4 | TGCACCACGATGGTGCA | |
| Maqu_0769 | glnA | -254 | 5 | TGCACTGCAGTGGTGCA | |
| Maqu_0767 | ntrB | -211 | 5.2 | CGCACCACCATGGTGCA | |
| Maqu_3001 | urtA | -146 | 4.5 | CGCACCAATTCATTGCA | |
| Maqu_3001 | urtA | -201 | 4.5 | TGCACCAATTGAGGGCG | |
| Marinobacter sp. ELB17 | |||||
| MELB17_20756 | glnK | -208 | 5.3 | CGCGCTATTATGGTGCA | |
| MELB17_20021 | glnA | -292 | 5.2 | CGCACAAATGTGGTGCA | |
| MELB17_20031 | ntrB | -253 | 5 | AGCACTATTTTGGTGCC | |
| MELB17_05409 | urtA | -210 | 4.3 | TGCACCAACTGTGAGCA | |
| Oceanobacter sp. RED65 | |||||
| RED65_16381 | glnA | -245 | 5.2 | TGCACTTTTATGGTGCG | |
| RED65_16381 | glnA | -215 | 4.4 | TGCACAACCTGAGTGCA | |
| RED65_16396 | ntrB | -240 | 5.3 | CGCACTATTTTGGTGCT | |
| RED65_07204 | ureD | -65 | 4.8 | TGCACCTTCGTGGTGCG | |
| RED65_07244 | PF09694 | -245 | 4.3 | TGCAACAAAATAGAGCT | |
| RED65_07244 | PF09694 | -316 | 4.3 | TGTTCTATTTTGGTGCT | |
| Oceanospirillum sp. MED92 | |||||
| MED92_00650 | glnA | -209 | 5.4 | TGCTCTATTTTGGTGCA | |
| MED92_00650 | glnA | -178 | 5.4 | TGCTCTATTTTGGTGCA | |
| MED92_00655 | ntrB | -148 | 5.3 | TGCACTGTTTTGGTGCG | |
| MED92_06736 | glnK | -222 | 5.5 | AGCACCAAATTGGTGCA | |
| MED92_06736 | glnK | -180 | 4.3 | CGCCCCATTTTATTGCA | |
| Marinomonas sp. MWYL1 | |||||
| Mmwyl1_0735 | ntrB | -74 | 5.4 | TGCACTATAATTGTGCA | |
| Mmwyl1_0736 | glnA | -252 | 4.3 | CGCACCAACATGGAACA | |
| Mmwyl1_0736 | glnA | -221 | 4.8 | TGATCTAAAATGGTGCA | |
| Mmwyl1_3656 | glnK | -208 | 4.5 | CGCACCAAGTTAACGCA | |
| Saccharophagus degradans 2-40 | |||||
| Sde_0502 | glnA | -273 | 5.1 | CGCACCACTTCAGTGCA | |
| Sde_0500 | ntrB | -307 | 4.9 | CGCACCATATTGAAGCA | |
| Sde_0218 | ureD | -160 | 4.5 | TGCACAATAATGGTGTT | |
| Sde_0218 | ureD | -137 | 4.4 | CGCGCCCACTTGGTGCG | |
| Sde_0231 | PF09694 | -193 | 5.1 | TGCACCATATTTGTGCC | |
| Teredinibacter turnerae T7901 | |||||
| TERTU_4421 | glnA | -263 | 4.3 | GGCGCCACACTGGTGCA | |
| TERTU_4421 | glnA | -234 | 5.1 | CGCACCACTATGGCGCG | |
| TERTU_4423 | ntrB | -344 | 4.8 | AGCACCATTACAGCGCA | |
| TERTU_4209 | ureD | -29 | 4.9 | TGCGTTAATATGGTGCA | |
| TERTU_4200 | urtA | -215 | 4.6 | GGCACCTTAATGGTGCC | |
| TERTU_4186 | PF09694 | -186 | 4.6 | TGCACTCATATTGTGCT | |
| Cellvibrio japonicus Ueda107 | |||||
| CJA_3534 | glnA | -288 | 5 | CGCACCAATACAGTGCT | |
| CJA_3536 | ntrB | -152 | 5.4 | AGCACCAAAATAGTGCA | |
| CJA_3392 | glnK | -241 | 4.9 | TGCTTCATTTTGGTGCG | |
| Chromohalobacter salexigens DSM 3043 | |||||
| Csal_3161 | glnK | -191 | 5.2 | TGCGCCATGTTGGTGCA | |
| Csal_0243 | glnA | -303 | 5.3 | TGCACCCAAATGGTGCA | |
| Csal_0243 | glnA | -272 | 4.3 | TGCACCTTCATGATGCT | |
| Csal_0245 | ntrB | -98 | 5.7 | TGCACTAATTTGGTGCA | |
| Csal_2313 | urtA | -162 | 4.9 | TGCGCCATTTAGGTGCG | |
| Csal_2313 | urtA | -225 | 4.4 | TGCACTTTTCTGGTGCT | |
| Reinekea sp. MED297 | |||||
| MED297_10311 | glnK | -332 | 4.8 | CGCACCTATACGGTGCG | |
| MED297_10311 | glnK | -314 | 4.3 | CGCCCTAAACTGGTGCG | |
| MED297_12572 | glnA | -245 | 4.9 | CGCACCAAAACAGCGCA | |
| MED297_12572 | glnA | -232 | 4.8 | CGCACTTAGTTGGTGCA | |
| MED297_03707 | ntrB | -217 | 5.3 | TGCACTATAATAGTGCT | |
| Alcanivorax borkumensis SK2 | |||||
| ABO_2530 | glnK | -213 | 5 | TGCCCCATTGTGGTGCG | |
| ABO_2530 | glnK | -200 | 4.9 | TGCGCTATAATGGCGCG | |
| ABO_1930 | PF09694 | -195 | 5.2 | CGCACCATTGCGGTGCA | |
| ABO_2262 | glnA | -242 | 5.2 | TGCACTATTTTAGTGCC | |
| ABO_2262 | glnA | -211 | 4.5 | TGCACTGCATCTGTGCA | |
| ABO_2260 | ntrB | -138 | 5.3 | TGCACCCATATGGTGCA | |
| ABO_2722 | ureD | -47 | 5 | TGCATAAATTTGGTGCA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |