Regulon of NtrC in Saccharophagus degradans 2-40

Properties
Regulator type:	Transcription factor
TF locus tag:	Sde_0499
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 63 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -160 Score: 4.5 Sequence: TGCACAATAATGGTGTT Position: -137 Score: 4.4 Sequence: CGCGCCCACTTGGTGCG Locus tag: Sde_0218 Name: ureD Funciton: Urease accessory protein, UreD Locus tag: Sde_0219 Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5) Locus tag: Sde_0220 Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5) Locus tag: Sde_0221 Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) Locus tag: Sde_0222 Name: ureE Funciton: Urease accessory protein, UreE Locus tag: Sde_0223 Name: ureF Funciton: Urease accessory protein, UreF Locus tag: Sde_0224 Name: ureG Funciton: Urease accessory protein, UreG Locus tag: Sde_0225 Name: ureJ Funciton: Urease accessory protein, UreJ
	Sde_0218	ureD	Urease accessory protein, UreD
	Sde_0219	ureA	Urease, gamma subunit (EC 3.5.1.5)
	Sde_0220	ureB	Urease, beta subunit (EC 3.5.1.5)
	Sde_0221	ureC	Urease, alpha subunit (EC 3.5.1.5)
	Sde_0222	ureE	Urease accessory protein, UreE
	Sde_0223	ureF	Urease accessory protein, UreF
	Sde_0224	ureG	Urease accessory protein, UreG
	Sde_0225	ureJ	Urease accessory protein, UreJ
Position: -193 Score: 5.1 Sequence: TGCACCATATTTGTGCC Locus tag: Sde_0231 Name: PF09694 Funciton: Conserved hypothetical protein, nitrogen assimilation associated Locus tag: Sde_0232 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Sde_0233 Name: amtB Funciton: Ammonium transporter
	Sde_0231	PF09694	Conserved hypothetical protein, nitrogen assimilation associated
	Sde_0232	glnK	Nitrogen regulatory protein P-II
	Sde_0233	amtB	Ammonium transporter
Position: -273 Score: 5.1 Sequence: CGCACCACTTCAGTGCA Locus tag: Sde_0502 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	Sde_0502	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -307 Score: 4.9 Sequence: CGCACCATATTGAAGCA Locus tag: Sde_0500 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: Sde_0499 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Sde_0500	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	Sde_0499	ntrC	Nitrogen regulation protein NR(I), Fis family

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD