Regulon of NtrC in Oceanobacter sp. RED65

Properties
Regulator type:	Transcription factor
TF locus tag:	RED65_16401
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 63 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -316 Score: 4.3 Sequence: TGTTCTATTTTGGTGCT Position: -245 Score: 4.3 Sequence: TGCAACAAAATAGAGCT Locus tag: RED65_07244 Name: PF09694 Funciton: Conserved hypothetical protein, nitrogen assimilation associated Locus tag: RED65_07249 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: RED65_07254 Name: amtB Funciton: Ammonium transporter
	RED65_07244	PF09694	Conserved hypothetical protein, nitrogen assimilation associated
	RED65_07249	glnK	Nitrogen regulatory protein P-II
	RED65_07254	amtB	Ammonium transporter
Position: -240 Score: 5.3 Sequence: CGCACTATTTTGGTGCT Locus tag: RED65_16396 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: RED65_16401 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	RED65_16396	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	RED65_16401	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -245 Score: 5.2 Sequence: TGCACTTTTATGGTGCG Position: -215 Score: 4.4 Sequence: TGCACAACCTGAGTGCA Locus tag: RED65_16381 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	RED65_16381	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -65 Score: 4.8 Sequence: TGCACCTTCGTGGTGCG Locus tag: RED65_07204 Name: ureD Funciton: Urease accessory protein, UreD Locus tag: RED65_07209 Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5) Locus tag: RED65_07214 Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5) Locus tag: RED65_07219 Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5) Locus tag: RED65_07224 Name: ureE Funciton: Urease accessory protein, UreE Locus tag: RED65_07229 Name: ureF Funciton: Urease accessory protein, UreF Locus tag: RED65_07234 Name: ureG Funciton: Urease accessory protein, UreG Locus tag: RED65_07239 Name: ureJ Funciton: Urease accessory protein, UreJ
	RED65_07204	ureD	Urease accessory protein, UreD
	RED65_07209	ureA	Urease, gamma subunit (EC 3.5.1.5)
	RED65_07214	ureB	Urease, beta subunit (EC 3.5.1.5)
	RED65_07219	ureC	Urease, alpha subunit (EC 3.5.1.5)
	RED65_07224	ureE	Urease accessory protein, UreE
	RED65_07229	ureF	Urease accessory protein, UreF
	RED65_07234	ureG	Urease accessory protein, UreG
	RED65_07239	ureJ	Urease accessory protein, UreJ

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD