Regulon of NtrC in Oceanobacter sp. RED65
| Regulator type: | Transcription factor |
| TF locus tag: | RED65_16401 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -316
Score: 4.3 Sequence: TGTTCTATTTTGGTGCT
Position: -245
Score: 4.3 Sequence: TGCAACAAAATAGAGCT
Locus tag: RED65_07244
Name: PF09694 Funciton: Conserved hypothetical protein, nitrogen assimilation associated
Locus tag: RED65_07249
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: RED65_07254
Name: amtB Funciton: Ammonium transporter |
|||
|
PF09694
|
Conserved hypothetical protein, nitrogen assimilation associated
|
||
|
glnK
|
Nitrogen regulatory protein P-II
|
||
|
amtB
|
Ammonium transporter
|
||
|
Position: -240
Score: 5.3 Sequence: CGCACTATTTTGGTGCT
Locus tag: RED65_16396
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RED65_16401
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
|||
|
ntrB
|
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
|
||
|
ntrC
|
Nitrogen regulation protein NR(I), Fis family
|
||
|
Position: -245
Score: 5.2 Sequence: TGCACTTTTATGGTGCG
Position: -215
Score: 4.4 Sequence: TGCACAACCTGAGTGCA
Locus tag: RED65_16381
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
|||
|
glnA
|
Glutamine synthetase type I (EC 6.3.1.2)
|
||
|
Position: -65
Score: 4.8 Sequence: TGCACCTTCGTGGTGCG
Locus tag: RED65_07204
Name: ureD Funciton: Urease accessory protein, UreD
Locus tag: RED65_07209
Name: ureA Funciton: Urease, gamma subunit (EC 3.5.1.5)
Locus tag: RED65_07214
Name: ureB Funciton: Urease, beta subunit (EC 3.5.1.5)
Locus tag: RED65_07219
Name: ureC Funciton: Urease, alpha subunit (EC 3.5.1.5)
Locus tag: RED65_07224
Name: ureE Funciton: Urease accessory protein, UreE
Locus tag: RED65_07229
Name: ureF Funciton: Urease accessory protein, UreF
Locus tag: RED65_07234
Name: ureG Funciton: Urease accessory protein, UreG
Locus tag: RED65_07239
Name: ureJ Funciton: Urease accessory protein, UreJ |
|||
|
ureD
|
Urease accessory protein, UreD
|
||
|
ureA
|
Urease, gamma subunit (EC 3.5.1.5)
|
||
|
ureB
|
Urease, beta subunit (EC 3.5.1.5)
|
||
|
ureC
|
Urease, alpha subunit (EC 3.5.1.5)
|
||
|
ureE
|
Urease accessory protein, UreE
|
||
|
ureF
|
Urease accessory protein, UreF
|
||
|
ureG
|
Urease accessory protein, UreG
|
||
|
ureJ
|
Urease accessory protein, UreJ
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |