Regulon of NtrC in Hahella chejuensis KCTC 2396
| Regulator type: | Transcription factor |
| TF locus tag: | HCH_01033 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -241
Score: 4.8 Sequence: CGCACCAAAAAAGAGCA
Locus tag: HCH_01034
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: HCH_01033
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -256
Score: 4.7 Sequence: TGCACCGCTTTGGTTCA
Locus tag: HCH_04519
Name: urtA Funciton: Urea ABC transporter, substrate-binding component
Locus tag: HCH_04517
Name: urtB Funciton: Urea ABC transporter, permease component 1
Locus tag: HCH_04516
Name: urtC Funciton: Urea ABC transporter, permease component 2
Locus tag: HCH_04515
Name: urtD Funciton: Urea ABC transporter, ATP-binding component 1
Locus tag: HCH_04514
Name: urtE Funciton: Urea ABC transporter, ATP-binding component 2 |
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urtA
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Urea ABC transporter, substrate-binding component
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urtB
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Urea ABC transporter, permease component 1
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urtC
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Urea ABC transporter, permease component 2
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urtD
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Urea ABC transporter, ATP-binding component 1
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urtE
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Urea ABC transporter, ATP-binding component 2
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Position: -265
Score: 5.1 Sequence: TGCACAAAATTTGTGCA
Position: -193
Score: 4.7 Sequence: TGCGCTATAATTGTGCC
Locus tag: HCH_06398
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: HCH_06399
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -287
Score: 5.1 Sequence: GGCACCAACTTGGTGCA
Locus tag: HCH_01036
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |