Regulog RbsR2 - Staphylococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - RbsR
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	3	1
Staphylococcus capitis SK14
Staphylococcus epidermidis ATCC 12228	3	1
Staphylococcus carnosus subsp. carnosus TM300	3	1
Staphylococcus haemolyticus JCSC1435	6	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	5	2
Macrococcus caseolyticus JCSC5402	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
rbsR2	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	* Staphylococcus haemolyticus JCSC1435 Site: position = -33 score = 6.61836 sequence = TCATGTAAGCGGTTACATAA Gene: SH0174: Transcriptional repressor of ribose utilization RbsR2, LacI family	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -32 score = 6.43357 sequence = ATATGAAAACGGTTACATAA Gene: SSP1396: Transcriptional repressor of ribose utilization RbsR2, LacI family	* Macrococcus caseolyticus JCSC5402 Site: position = -36 score = 6.61836 sequence = TTATGTAATCGGTTACACAA Gene: MCCL_0348: Transcriptional repressor of ribose utilization RbsR2, LacI family	Transcriptional repressor of ribose utilization RbsR2, LacI family
rbsK	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0175: Ribokinase (EC 2.7.1.15)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0744: Ribokinase (EC 2.7.1.15)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0349: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)
rbsD	Staphylococcus aureus subsp. aureus N315 Gene: SA0259: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Staphylococcus capitis SK14 Gene: STACA0001_0974: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Staphylococcus epidermidis ATCC 12228 Gene: SE2087: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_2420: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Staphylococcus haemolyticus JCSC1435 Gene: SH0176: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -35 score = 6.68713 sequence = TTATGTAACGGGTTACATAT Gene: SSP1395: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Macrococcus caseolyticus JCSC5402	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsA	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0177: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1394: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Macrococcus caseolyticus JCSC5402	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0178: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1393: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Macrococcus caseolyticus JCSC5402	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsB	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435 Gene: SH0179: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1392: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Macrococcus caseolyticus JCSC5402	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
MCCL_0350	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0350: hypothetical protein	hypothetical protein
MCCL_0351	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0351: hypothetical protein	hypothetical protein
rbsU	* Staphylococcus aureus subsp. aureus N315 Site: position = -88 score = 4.52793 sequence = TTATGAAAACGCATGCATTT Gene: SA0260: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Staphylococcus capitis SK14 Gene: STACA0001_0973: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	* Staphylococcus epidermidis ATCC 12228 Site: position = -270 score = 4.71616 sequence = GTAGGTAACCGTTAAAATAA Gene: SE2088: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -103 score = 5.42855 sequence = ATATGAAAGCGTATACATAT Gene: Sca_2421: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
rbsK	Staphylococcus aureus subsp. aureus N315 Gene: SA0258: Ribokinase (EC 2.7.1.15)	Staphylococcus capitis SK14 Gene: STACA0001_0975: Ribokinase (EC 2.7.1.15)	Staphylococcus epidermidis ATCC 12228 Gene: SE2086: Ribokinase (EC 2.7.1.15)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_2419: Ribokinase (EC 2.7.1.15)	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402	Ribokinase (EC 2.7.1.15)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR2 - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --