Regulog PaaR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Azoarcus sp. EbN1	12	2
Dechloromonas aromatica RCB
Thauera sp. MZ1T	2	2
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
paaG	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	* Azoarcus sp. EbN1 Site: position = -115 score = 5.5897 sequence = ATTGATTGACCGGTCGGTCAAA Gene: ebA3542: Enoyl-CoA hydratase (EC 4.2.1.17)	Dechloromonas aromatica RCB Gene: Daro_0371: Enoyl-CoA hydratase (EC 4.2.1.17)	Thauera sp. MZ1T Gene: Tmz1t_1512: Enoyl-CoA hydratase (EC 4.2.1.17)	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Enoyl-CoA hydratase (EC 4.2.1.17)
paaH	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3543: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Dechloromonas aromatica RCB Gene: Daro_0372: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Thauera sp. MZ1T Gene: Tmz1t_1511: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaI	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3544: Phenylacetic acid degradation protein paaI	Dechloromonas aromatica RCB Gene: Daro_0373: Phenylacetic acid degradation protein paaI	Thauera sp. MZ1T Gene: Tmz1t_1510: Phenylacetic acid degradation protein paaI	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetic acid degradation protein paaI
paaK	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3545: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Dechloromonas aromatica RCB Gene: Daro_0374: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Thauera sp. MZ1T Gene: Tmz1t_1509: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3547: Phenylacetate-CoA oxygenase, PaaA subunit	Dechloromonas aromatica RCB Gene: Daro_0377: Phenylacetate-CoA oxygenase, PaaA subunit	Thauera sp. MZ1T Gene: Tmz1t_1506: Phenylacetate-CoA oxygenase, PaaA subunit	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetate-CoA oxygenase, PaaA subunit
paaB	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3548: Phenylacetate-CoA oxygenase, PaaB subunit	Dechloromonas aromatica RCB Gene: Daro_0378: Phenylacetate-CoA oxygenase, PaaB subunit	Thauera sp. MZ1T Gene: Tmz1t_1505: Phenylacetate-CoA oxygenase, PaaB subunit	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetate-CoA oxygenase, PaaB subunit
paaC	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3550: Phenylacetate-CoA oxygenase, PaaC subunit	Dechloromonas aromatica RCB Gene: Daro_0379: Phenylacetate-CoA oxygenase, PaaC subunit	Thauera sp. MZ1T Gene: Tmz1t_1504: Phenylacetate-CoA oxygenase, PaaC subunit	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetate-CoA oxygenase, PaaC subunit
paaD	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3551: Phenylacetate-CoA oxygenase, PaaD subunit	Dechloromonas aromatica RCB Gene: Daro_0380: Phenylacetate-CoA oxygenase, PaaD subunit	Thauera sp. MZ1T Gene: Tmz1t_1503: Phenylacetate-CoA oxygenase, PaaD subunit	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetate-CoA oxygenase, PaaD subunit
paaE	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3553: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Dechloromonas aromatica RCB Gene: Daro_0381: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Thauera sp. MZ1T Gene: Tmz1t_1502: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaR	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3555: Transcriptional regulator of phenylacetic acid degradation, TetR family	Dechloromonas aromatica RCB	* Thauera sp. MZ1T Site: position = -241 score = 5.45012 sequence = ATTGATCGACTGGTTGGTCGGA Gene: Tmz1t_2997: Transcriptional regulator of phenylacetic acid degradation, TetR family	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Transcriptional regulator of phenylacetic acid degradation, TetR family
paaZ	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	* Azoarcus sp. EbN1 Site: position = -150 score = 5.49437 sequence = TTTGACCGACCGGTCAATCAAT Gene: ebA3541: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Dechloromonas aromatica RCB Gene: Daro_0370: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Thauera sp. MZ1T Gene: Tmz1t_1513: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaY2	Methylobacillus flagellatus KT	Methylophilales bacterium HTCC2181	Methylotenera mobilis JLW8	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Azoarcus sp. EbN1 Gene: ebA3540: Phenylacetic acid degradation protein PaaY	Dechloromonas aromatica RCB	* Thauera sp. MZ1T Site: position = -236 score = 5.20824 sequence = TCCGACCAACCAGTCGATCAAT Gene: Tmz1t_2998: Phenylacetic acid degradation protein PaaY	Chromobacterium violaceum ATCC 12472	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Phenylacetic acid degradation protein PaaY

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PaaR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --