Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog RbkR - Thermoproteales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Crenarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 23 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pyrobaculum aerophilum str. IM2 4 3
Pyrobaculum arsenaticum DSM 13514 4 3
Pyrobaculum calidifontis JCM 11548 4 3
Pyrobaculum islandicum DSM 4184 4 3
Thermoproteus neutrophilus V24Sta 4 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
arfB
*
Pyrobaculum aerophilum str. IM2

Site:
position = -82
score = 3.69401
sequence = AGTCAACAACAGTGTGTA

Site:
position = -49
score = 5.45455
sequence = TGTAAACATCAGTTGACT

Gene: PAE2983: Formamide hydrolase
*
Pyrobaculum arsenaticum DSM 13514

Site:
position = -81
score = 5.63315
sequence = TGTAAACAAAAGTTACCA

Gene: Pars_1350: Formamide hydrolase
*
Pyrobaculum calidifontis JCM 11548

Site:
position = -50
score = 4.17169
sequence = TGTAAACTCTTGGAGACT

Gene: Pcal_1124: Formamide hydrolase
*
Pyrobaculum islandicum DSM 4184

Site:
position = -50
score = 5.86552
sequence = TGTAAACTTTAGTTTACG

Gene: Pisl_0383: Formamide hydrolase
*
Thermoproteus neutrophilus V24Sta

Site:
position = -84
score = 4.33865
sequence = TGTAAACCTTAGTAGATA

Site:
position = -51
score = 6.09907
sequence = TGTAAACTTCTGTTTACA

Gene: Tneu_1744: Formamide hydrolase
Formamide hydrolase
 
CRON 2.
ribB
*
Pyrobaculum aerophilum str. IM2

Site:
position = -18
score = 4.44216
sequence = TAGAAAATTAAGTTTACC

Site:
position = -51
score = 4.26102
sequence = AGTGTAAAAAAGTTGACA

Gene: PAE2986: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Pyrobaculum arsenaticum DSM 13514

Site:
position = -36
score = 3.74701
sequence = AGAAAAAAAGAGTTAACC

Site:
position = -68
score = 5.54724
sequence = TGTAAAAATCAGTTGACA

Gene: Pars_1353: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Pyrobaculum calidifontis JCM 11548

Site:
position = -51
score = 6.0527
sequence = TGTAAAAAATAGTTTACA

Site:
position = -19
score = 3.92099
sequence = CCTCACCTAGAGTTGACA

Gene: Pcal_1121: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Pyrobaculum islandicum DSM 4184

Site:
position = -51
score = 6.29367
sequence = TGTAAACATTAGTTTACA

Gene: Pisl_0386: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Thermoproteus neutrophilus V24Sta

Site:
position = -32
score = 6.371
sequence = TGTAAACAATAGTTTACA

Gene: Tneu_1741: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
 
CRON 3.
arfA
*
Pyrobaculum aerophilum str. IM2

Site:
position = -22
score = 3.69401
sequence = TACACACTGTTGTTGACT

Site:
position = -55
score = 5.45455
sequence = AGTCAACTGATGTTTACA

Gene: PAE2984: GTP cyclohydrolase III (EC 3.5.4.29)
*
Pyrobaculum arsenaticum DSM 13514

Site:
position = -56
score = 5.63315
sequence = TGGTAACTTTTGTTTACA

Site:
position = -23
score = 3.65911
sequence = TATAGCGAGTTGTTTACA

Gene: Pars_1351: GTP cyclohydrolase III (EC 3.5.4.29)
*
Pyrobaculum calidifontis JCM 11548

Site:
position = -54
score = 4.17169
sequence = AGTCTCCAAGAGTTTACA

Gene: Pcal_1123: GTP cyclohydrolase III (EC 3.5.4.29)
*
Pyrobaculum islandicum DSM 4184

Site:
position = -56
score = 5.86552
sequence = CGTAAACTAAAGTTTACA

Gene: Pisl_0384: GTP cyclohydrolase III (EC 3.5.4.29)
*
Thermoproteus neutrophilus V24Sta

Site:
position = -56
score = 6.09907
sequence = TGTAAACAGAAGTTTACA

Site:
position = -23
score = 4.33865
sequence = TATCTACTAAGGTTTACA

Gene: Tneu_1743: GTP cyclohydrolase III (EC 3.5.4.29)
GTP cyclohydrolase III (EC 3.5.4.29)
arfC
 
Pyrobaculum aerophilum str. IM2

Gene: PAE2985: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
Pyrobaculum arsenaticum DSM 13514

Gene: Pars_1352: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
Pyrobaculum calidifontis JCM 11548

Gene: Pcal_1122: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
Pyrobaculum islandicum DSM 4184

Gene: Pisl_0385: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
 
Thermoproteus neutrophilus V24Sta

Gene: Tneu_1742: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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