Regulog RbkR - Thermoproteales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Crenarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermoproteales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pyrobaculum aerophilum str. IM2 | 4 | 3 |
| Pyrobaculum arsenaticum DSM 13514 | 4 | 3 |
| Pyrobaculum calidifontis JCM 11548 | 4 | 3 |
| Pyrobaculum islandicum DSM 4184 | 4 | 3 |
| Thermoproteus neutrophilus V24Sta | 4 | 3 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| arfB |
*
Pyrobaculum aerophilum str. IM2 Site: position = -82 score = 3.69401 sequence = AGTCAACAACAGTGTGTA Site: position = -49 score = 5.45455 sequence = TGTAAACATCAGTTGACT Gene: PAE2983: Formamide hydrolase |
*
Pyrobaculum arsenaticum DSM 13514 Site: position = -81 score = 5.63315 sequence = TGTAAACAAAAGTTACCA Gene: Pars_1350: Formamide hydrolase |
*
Pyrobaculum calidifontis JCM 11548 Site: position = -50 score = 4.17169 sequence = TGTAAACTCTTGGAGACT Gene: Pcal_1124: Formamide hydrolase |
*
Pyrobaculum islandicum DSM 4184 Site: position = -50 score = 5.86552 sequence = TGTAAACTTTAGTTTACG Gene: Pisl_0383: Formamide hydrolase |
*
Thermoproteus neutrophilus V24Sta Site: position = -84 score = 4.33865 sequence = TGTAAACCTTAGTAGATA Site: position = -51 score = 6.09907 sequence = TGTAAACTTCTGTTTACA Gene: Tneu_1744: Formamide hydrolase |
Formamide hydrolase |
| CRON 2. | ||||||
| ribB |
*
Pyrobaculum aerophilum str. IM2 Site: position = -18 score = 4.44216 sequence = TAGAAAATTAAGTTTACC Site: position = -51 score = 4.26102 sequence = AGTGTAAAAAAGTTGACA Gene: PAE2986: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Pyrobaculum arsenaticum DSM 13514 Site: position = -36 score = 3.74701 sequence = AGAAAAAAAGAGTTAACC Site: position = -68 score = 5.54724 sequence = TGTAAAAATCAGTTGACA Gene: Pars_1353: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Pyrobaculum calidifontis JCM 11548 Site: position = -51 score = 6.0527 sequence = TGTAAAAAATAGTTTACA Site: position = -19 score = 3.92099 sequence = CCTCACCTAGAGTTGACA Gene: Pcal_1121: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Pyrobaculum islandicum DSM 4184 Site: position = -51 score = 6.29367 sequence = TGTAAACATTAGTTTACA Gene: Pisl_0386: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Thermoproteus neutrophilus V24Sta Site: position = -32 score = 6.371 sequence = TGTAAACAATAGTTTACA Gene: Tneu_1741: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
| CRON 3. | ||||||
| arfA |
*
Pyrobaculum aerophilum str. IM2 Site: position = -22 score = 3.69401 sequence = TACACACTGTTGTTGACT Site: position = -55 score = 5.45455 sequence = AGTCAACTGATGTTTACA Gene: PAE2984: GTP cyclohydrolase III (EC 3.5.4.29) |
*
Pyrobaculum arsenaticum DSM 13514 Site: position = -56 score = 5.63315 sequence = TGGTAACTTTTGTTTACA Site: position = -23 score = 3.65911 sequence = TATAGCGAGTTGTTTACA Gene: Pars_1351: GTP cyclohydrolase III (EC 3.5.4.29) |
*
Pyrobaculum calidifontis JCM 11548 Site: position = -54 score = 4.17169 sequence = AGTCTCCAAGAGTTTACA Gene: Pcal_1123: GTP cyclohydrolase III (EC 3.5.4.29) |
*
Pyrobaculum islandicum DSM 4184 Site: position = -56 score = 5.86552 sequence = CGTAAACTAAAGTTTACA Gene: Pisl_0384: GTP cyclohydrolase III (EC 3.5.4.29) |
*
Thermoproteus neutrophilus V24Sta Site: position = -56 score = 6.09907 sequence = TGTAAACAGAAGTTTACA Site: position = -23 score = 4.33865 sequence = TATCTACTAAGGTTTACA Gene: Tneu_1743: GTP cyclohydrolase III (EC 3.5.4.29) |
GTP cyclohydrolase III (EC 3.5.4.29) |
| arfC |
Gene: PAE2985: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
Gene: Pars_1352: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
Gene: Pcal_1122: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
Gene: Pisl_0385: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
Gene: Tneu_1742: 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |