Regulog NrtR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrtR
- By taxonomy - Bifidobacteriaceae
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 2 | 1 |
| Bifidobacterium angulatum DSM 20098 | 6 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 2 | 1 |
| Bifidobacterium bifidum NCIMB 41171 | 5 | 1 |
| Bifidobacterium breve DSM 20213 | 5 | 1 |
| Bifidobacterium dentium Bd1 | 2 | 1 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 6 | 1 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 5 | 1 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| nrtR |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -79 score = 6.3382 sequence = TTATAGTCATGTTGACTATAA Gene: BAD_1071: Nudix-related transcriptional regulator NrtR |
*
Bifidobacterium angulatum DSM 20098 Site: position = 47 score = 6.41608 sequence = TTATGGTCAGTGTGACTATAA Gene: BIFANG_01628: Nudix-related transcriptional regulator NrtR |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -105 score = 6.20474 sequence = TAATAGTCATAGTGACTATTA Gene: BLA_0733: Nudix-related transcriptional regulator NrtR |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -75 score = 6.12213 sequence = TTAAAGTCATGTTGACTATAA Gene: BbifN4_010100002549: Nudix-related transcriptional regulator NrtR |
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Bifidobacterium breve DSM 20213 Site: position = -29 score = 6.46496 sequence = TTATAGTCATTATGACTATAA Gene: BIFBRE_01679: Nudix-related transcriptional regulator NrtR |
*
Bifidobacterium dentium Bd1 Site: position = -71 score = 6.01658 sequence = TTATGGTCATGTTGACCATAA Gene: BDP_1506: Nudix-related transcriptional regulator NrtR |
|
*
Bifidobacterium longum NCC2705 Site: position = -75 score = 6.41608 sequence = TTATGGTCATTGTGACTATAA Gene: BL1373: Nudix-related transcriptional regulator NrtR |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -75 score = 6.41608 sequence = TTATGGTCATTGTGACTATAA Gene: Blon_0909: Nudix-related transcriptional regulator NrtR |
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Nudix-related transcriptional regulator NrtR |
| nadA |
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Gene: BIFANG_01626: Quinolinate synthetase (EC 4.1.99.-) |
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Gene: BbifN4_010100002554: Quinolinate synthetase (EC 4.1.99.-) |
Gene: BIFBRE_01678: Quinolinate synthetase (EC 4.1.99.-) |
|
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Gene: BL1374: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Blon_0910: Quinolinate synthetase (EC 4.1.99.-) |
|
Quinolinate synthetase (EC 4.1.99.-) |
| nadB |
|
Gene: BIFANG_01625: L-aspartate oxidase (EC 1.4.3.16) |
|
Gene: BbifN4_010100002559: L-aspartate oxidase (EC 1.4.3.16) |
Gene: BIFBRE_01677: L-aspartate oxidase (EC 1.4.3.16) |
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Gene: BL1375: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Blon_0911: L-aspartate oxidase (EC 1.4.3.16) |
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L-aspartate oxidase (EC 1.4.3.16) |
| nadC |
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Gene: BIFANG_01624: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
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Gene: BbifN4_010100002564: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: BIFBRE_01676: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
|
|
Gene: BL1376: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Blon_0912: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
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Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
| sufS |
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Gene: BIFANG_01623: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: BbifN4_010100002569: Cysteine desulfurase (EC 2.8.1.7) |
Gene: BIFBRE_01675: Cysteine desulfurase (EC 2.8.1.7) |
|
|
Gene: BL1377: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Blon_0913: Cysteine desulfurase (EC 2.8.1.7) |
|
Cysteine desulfurase (EC 2.8.1.7) |
| niaP |
Gene: BAD_1070: Niacin transporter NiaP |
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Gene: BLA_0732: Niacin transporter NiaP |
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Gene: BDP_1505: Niacin transporter NiaP |
Gene: BIFGAL_00257: Niacin transporter NiaP |
Gene: BL1378: Niacin transporter NiaP |
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Niacin transporter NiaP |
| BIFANG_01627 |
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Gene: BIFANG_01627: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |