Regulog NrtR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrtR
Regulation mode:
Biological process:	NAD biosynthesis
Effector:	Adenosine diphosphate ribose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By trascription factor - NrtR
By taxonomy - Bifidobacteriaceae
By TF family - NrtR
By effector - Adenosine diphosphate ribose
By pathway - NAD biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703	2	1
Bifidobacterium angulatum DSM 20098	6	1
Bifidobacterium animalis subsp. lactis AD011	2	1
Bifidobacterium bifidum NCIMB 41171	5	1
Bifidobacterium breve DSM 20213	5	1
Bifidobacterium dentium Bd1	2	1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	6	1
Bifidobacterium longum subsp. infantis ATCC 15697	5	1
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
nrtR	* Bifidobacterium adolescentis ATCC 15703 Site: position = -79 score = 6.3382 sequence = TTATAGTCATGTTGACTATAA Gene: BAD_1071: Nudix-related transcriptional regulator NrtR	* Bifidobacterium angulatum DSM 20098 Site: position = 47 score = 6.41608 sequence = TTATGGTCAGTGTGACTATAA Gene: BIFANG_01628: Nudix-related transcriptional regulator NrtR	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -105 score = 6.20474 sequence = TAATAGTCATAGTGACTATTA Gene: BLA_0733: Nudix-related transcriptional regulator NrtR	* Bifidobacterium bifidum NCIMB 41171 Site: position = -75 score = 6.12213 sequence = TTAAAGTCATGTTGACTATAA Gene: BbifN4_010100002549: Nudix-related transcriptional regulator NrtR	* Bifidobacterium breve DSM 20213 Site: position = -29 score = 6.46496 sequence = TTATAGTCATTATGACTATAA Gene: BIFBRE_01679: Nudix-related transcriptional regulator NrtR	* Bifidobacterium dentium Bd1 Site: position = -71 score = 6.01658 sequence = TTATGGTCATGTTGACCATAA Gene: BDP_1506: Nudix-related transcriptional regulator NrtR	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -75 score = 6.41608 sequence = TTATGGTCATTGTGACTATAA Gene: BL1373: Nudix-related transcriptional regulator NrtR	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -75 score = 6.41608 sequence = TTATGGTCATTGTGACTATAA Gene: Blon_0909: Nudix-related transcriptional regulator NrtR	Gardnerella vaginalis 409-05	Nudix-related transcriptional regulator NrtR
nadA	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01626: Quinolinate synthetase (EC 4.1.99.-)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100002554: Quinolinate synthetase (EC 4.1.99.-)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01678: Quinolinate synthetase (EC 4.1.99.-)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1374: Quinolinate synthetase (EC 4.1.99.-)	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0910: Quinolinate synthetase (EC 4.1.99.-)	Gardnerella vaginalis 409-05	Quinolinate synthetase (EC 4.1.99.-)
nadB	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01625: L-aspartate oxidase (EC 1.4.3.16)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100002559: L-aspartate oxidase (EC 1.4.3.16)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01677: L-aspartate oxidase (EC 1.4.3.16)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1375: L-aspartate oxidase (EC 1.4.3.16)	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0911: L-aspartate oxidase (EC 1.4.3.16)	Gardnerella vaginalis 409-05	L-aspartate oxidase (EC 1.4.3.16)
nadC	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01624: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100002564: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01676: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1376: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0912: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Gardnerella vaginalis 409-05	Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
sufS	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01623: Cysteine desulfurase (EC 2.8.1.7)	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100002569: Cysteine desulfurase (EC 2.8.1.7)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01675: Cysteine desulfurase (EC 2.8.1.7)	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1377: Cysteine desulfurase (EC 2.8.1.7)	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0913: Cysteine desulfurase (EC 2.8.1.7)	Gardnerella vaginalis 409-05	Cysteine desulfurase (EC 2.8.1.7)
niaP	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1070: Niacin transporter NiaP	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0732: Niacin transporter NiaP	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1505: Niacin transporter NiaP	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00257: Niacin transporter NiaP	Bifidobacterium longum NCC2705 Gene: BL1378: Niacin transporter NiaP	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Niacin transporter NiaP
BIFANG_01627	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01627: hypothetical protein	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrtR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --