Regulog BgaR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Galactosides utilization
Effector:	Beta-galactosides
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By effector - Beta-galactosides
By pathway - Galactosides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098	2	2
Bifidobacterium animalis subsp. lactis AD011	5	3
Bifidobacterium bifidum NCIMB 41171	3	2
Bifidobacterium breve DSM 20213	2	2
Bifidobacterium dentium Bd1	5	3
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	7	5
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
bgaY	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -191 score = 5.16992 sequence = AACTGTTTGCGCAATCATGC Site: position = -114 score = 5.89582 sequence = CTATGTTTGCGTAAACATTC Gene: BLA_0464: Putative beta-galactoside ABC transport system, permease component 2	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -270 score = 5.09794 sequence = TAATGTTTTCGTCATCATAG Site: position = -179 score = 5.52128 sequence = TTCTGATAACGTAAACATTT Gene: BDP_0655: Putative beta-galactoside ABC transport system, permease component 2	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -44 score = 5.83258 sequence = TGATGATAACGCAAACATTT Gene: BL1170: Putative beta-galactoside ABC transport system, permease component 2	Gardnerella vaginalis 409-05	Putative beta-galactoside ABC transport system, permease component 2
bgaZ	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0463: Putative beta-galactoside ABC transport system, permease component 1	* Bifidobacterium bifidum NCIMB 41171 Site: position = -200 score = 4.67111 sequence = CTATGTTTTGGTTACCATCA Site: position = -118 score = 5.66184 sequence = TCATGGTAACGCAAACATTT Gene: BbifN4_010100008756: Putative beta-galactoside ABC transport system, permease component 1	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0656: Putative beta-galactoside ABC transport system, permease component 1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1169: Putative beta-galactoside ABC transport system, permease component 1	Gardnerella vaginalis 409-05	Putative beta-galactoside ABC transport system, permease component 1
bgaB	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2016: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1603: Beta-galactosidase (EC 3.2.1.23)	* Bifidobacterium angulatum DSM 20098 Site: position = -124 score = 4.80163 sequence = AAATGGTTTCGTCACCATTT Site: position = -35 score = 5.95376 sequence = TAATGATAACGCAAACATTT Gene: BIFANG_00302: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0462: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100008761: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00763: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium dentium Bd1 Gene: BDP_0657: Beta-galactosidase (EC 3.2.1.23)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1168: Beta-galactosidase (EC 3.2.1.23)	Gardnerella vaginalis 409-05	Beta-galactosidase (EC 3.2.1.23)
bgaX	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -83 score = 6.37323 sequence = ATATGTTTGCGCAAACATAA Gene: BLA_0461: Putative beta-galactoside ABC transport system, periplasmic component	Bifidobacterium bifidum NCIMB 41171	* Bifidobacterium breve DSM 20213 Site: position = -156 score = 5.27378 sequence = AGATGTTATCGCAACCATAG Gene: BIFBRE_00764: Putative beta-galactoside ABC transport system, periplasmic component	* Bifidobacterium dentium Bd1 Site: position = -124 score = 6.03983 sequence = TTTTGTTTGCGTAAACATAT Gene: BDP_0659: Putative beta-galactoside ABC transport system, periplasmic component	Bifidobacterium gallicum DSM 20093	2 Bifidobacterium longum NCC2705* Site: position = -170 score = 5.27378 sequence = AGATGTTATCGCAACCATAG Gene: BL1164: Putative beta-galactoside ABC transport system, periplasmic component Site: position = -108 score = 5.79325 sequence = TCGTGTTTGCGTAAACATAA Gene: BL1165: Putative beta-galactoside ABC transport system, periplasmic component	Gardnerella vaginalis 409-05	Putative beta-galactoside ABC transport system, periplasmic component

CRON 2.
bgaR	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	* Bifidobacterium angulatum DSM 20098 Site: position = -176 score = 5.95376 sequence = AAATGTTTGCGTTATCATTA Gene: BIFANG_00301: Transcriptional regulator for beta-galactosides utilization, LacI family	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -174 score = 5.89582 sequence = GAATGTTTACGCAAACATAG Site: position = -97 score = 5.16992 sequence = GCATGATTGCGCAAACAGTT Gene: BLA_0465: Transcriptional regulator for beta-galactosides utilization, LacI family	* Bifidobacterium bifidum NCIMB 41171 Site: position = -128 score = 5.66184 sequence = AAATGTTTGCGTTACCATGA Gene: BbifN4_010100008751: Transcriptional regulator for beta-galactosides utilization, LacI family	* Bifidobacterium breve DSM 20213 Site: position = -208 score = 5.49919 sequence = AATTGTTTACGTTATCATCA Gene: BIFBRE_00761: Transcriptional regulator for beta-galactosides utilization, LacI family	Bifidobacterium dentium Bd1 Gene: BDP_0654: Transcriptional regulator for beta-galactosides utilization, LacI family	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -192 score = 5.83258 sequence = AAATGTTTGCGTTATCATCA Gene: BL1171: Transcriptional regulator for beta-galactosides utilization, LacI family	Gardnerella vaginalis 409-05	Transcriptional regulator for beta-galactosides utilization, LacI family

CRON 3.
abfA1	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -169 score = 6.03983 sequence = ATATGTTTACGCAAACAAAA Gene: BDP_0658: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -71 score = 5.79325 sequence = TTATGTTTACGCAAACACGA Gene: BL1166: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Gardnerella vaginalis 409-05	Alpha-N-arabinofuranosidase (EC 3.2.1.55)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BgaR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --