Regulog BgaR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Galactosides utilization |
| Effector: | Beta-galactosides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Beta-galactosides
- By pathway - Galactosides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | 2 | 2 |
| Bifidobacterium animalis subsp. lactis AD011 | 5 | 3 |
| Bifidobacterium bifidum NCIMB 41171 | 3 | 2 |
| Bifidobacterium breve DSM 20213 | 2 | 2 |
| Bifidobacterium dentium Bd1 | 5 | 3 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 7 | 5 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| bgaY |
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*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -191 score = 5.16992 sequence = AACTGTTTGCGCAATCATGC Site: position = -114 score = 5.89582 sequence = CTATGTTTGCGTAAACATTC Gene: BLA_0464: Putative beta-galactoside ABC transport system, permease component 2 |
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*
Bifidobacterium dentium Bd1 Site: position = -270 score = 5.09794 sequence = TAATGTTTTCGTCATCATAG Site: position = -179 score = 5.52128 sequence = TTCTGATAACGTAAACATTT Gene: BDP_0655: Putative beta-galactoside ABC transport system, permease component 2 |
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*
Bifidobacterium longum NCC2705 Site: position = -44 score = 5.83258 sequence = TGATGATAACGCAAACATTT Gene: BL1170: Putative beta-galactoside ABC transport system, permease component 2 |
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Putative beta-galactoside ABC transport system, permease component 2 |
| bgaZ |
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Gene: BLA_0463: Putative beta-galactoside ABC transport system, permease component 1 |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -200 score = 4.67111 sequence = CTATGTTTTGGTTACCATCA Site: position = -118 score = 5.66184 sequence = TCATGGTAACGCAAACATTT Gene: BbifN4_010100008756: Putative beta-galactoside ABC transport system, permease component 1 |
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Gene: BDP_0656: Putative beta-galactoside ABC transport system, permease component 1 |
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Gene: BL1169: Putative beta-galactoside ABC transport system, permease component 1 |
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Putative beta-galactoside ABC transport system, permease component 1 |
| bgaB |
Gene: Blon_2016: Beta-galactosidase (EC 3.2.1.23) |
Gene: BAD_1603: Beta-galactosidase (EC 3.2.1.23) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -124 score = 4.80163 sequence = AAATGGTTTCGTCACCATTT Site: position = -35 score = 5.95376 sequence = TAATGATAACGCAAACATTT Gene: BIFANG_00302: Beta-galactosidase (EC 3.2.1.23) |
Gene: BLA_0462: Beta-galactosidase (EC 3.2.1.23) |
Gene: BbifN4_010100008761: Beta-galactosidase (EC 3.2.1.23) |
Gene: BIFBRE_00763: Beta-galactosidase (EC 3.2.1.23) |
Gene: BDP_0657: Beta-galactosidase (EC 3.2.1.23) |
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Gene: BL1168: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
| bgaX |
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*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -83 score = 6.37323 sequence = ATATGTTTGCGCAAACATAA Gene: BLA_0461: Putative beta-galactoside ABC transport system, periplasmic component |
|
*
Bifidobacterium breve DSM 20213 Site: position = -156 score = 5.27378 sequence = AGATGTTATCGCAACCATAG Gene: BIFBRE_00764: Putative beta-galactoside ABC transport system, periplasmic component |
*
Bifidobacterium dentium Bd1 Site: position = -124 score = 6.03983 sequence = TTTTGTTTGCGTAAACATAT Gene: BDP_0659: Putative beta-galactoside ABC transport system, periplasmic component |
|
*2
Bifidobacterium longum NCC2705 Site: position = -170 score = 5.27378 sequence = AGATGTTATCGCAACCATAG Gene: BL1164: Putative beta-galactoside ABC transport system, periplasmic component Site: position = -108 score = 5.79325 sequence = TCGTGTTTGCGTAAACATAA Gene: BL1165: Putative beta-galactoside ABC transport system, periplasmic component |
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Putative beta-galactoside ABC transport system, periplasmic component |
| CRON 2. | |||||||||||
| bgaR |
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*
Bifidobacterium angulatum DSM 20098 Site: position = -176 score = 5.95376 sequence = AAATGTTTGCGTTATCATTA Gene: BIFANG_00301: Transcriptional regulator for beta-galactosides utilization, LacI family |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -174 score = 5.89582 sequence = GAATGTTTACGCAAACATAG Site: position = -97 score = 5.16992 sequence = GCATGATTGCGCAAACAGTT Gene: BLA_0465: Transcriptional regulator for beta-galactosides utilization, LacI family |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -128 score = 5.66184 sequence = AAATGTTTGCGTTACCATGA Gene: BbifN4_010100008751: Transcriptional regulator for beta-galactosides utilization, LacI family |
*
Bifidobacterium breve DSM 20213 Site: position = -208 score = 5.49919 sequence = AATTGTTTACGTTATCATCA Gene: BIFBRE_00761: Transcriptional regulator for beta-galactosides utilization, LacI family |
Gene: BDP_0654: Transcriptional regulator for beta-galactosides utilization, LacI family |
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*
Bifidobacterium longum NCC2705 Site: position = -192 score = 5.83258 sequence = AAATGTTTGCGTTATCATCA Gene: BL1171: Transcriptional regulator for beta-galactosides utilization, LacI family |
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Transcriptional regulator for beta-galactosides utilization, LacI family |
| CRON 3. | |||||||||||
| abfA1 |
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Bifidobacterium dentium Bd1 Site: position = -169 score = 6.03983 sequence = ATATGTTTACGCAAACAAAA Gene: BDP_0658: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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*
Bifidobacterium longum NCC2705 Site: position = -71 score = 5.79325 sequence = TTATGTTTACGCAAACACGA Gene: BL1166: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |