Regulog XylR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | |
| Biological process: | Xylose utilization |
| Effector: | Xylose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - ROK
- By effector - Xylose
- By pathway - Xylose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 2 | 2 |
| Bifidobacterium adolescentis ATCC 15703 | 3 | 3 |
| Bifidobacterium angulatum DSM 20098 | 3 | 3 |
| Bifidobacterium animalis subsp. lactis AD011 | 3 | 3 |
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 3 | 3 |
| Bifidobacterium gallicum DSM 20093 | 3 | 3 |
| Bifidobacterium longum NCC2705 | 3 | 3 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| xylR |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -166 score = 5.464 sequence = ATAAGTTAGACGATTAAACTATA Gene: Blon_0573: Xylose repressor XylR, ROK family |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -121 score = 5.91191 sequence = AATAGTTAGATGAATAAACTATA Gene: BAD_0433: Xylose repressor XylR, ROK family |
*
Bifidobacterium angulatum DSM 20098 Site: position = -119 score = 5.76651 sequence = AATAGTTAGACGAATAAACTATA Gene: BIFANG_00025: Xylose repressor XylR, ROK family |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -88 score = 5.60066 sequence = TATAGTATGTTCATTAAACTAAT Gene: BLA_1053: Xylose repressor XylR, ROK family |
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Gene: BIFBRE_00073: Xylose repressor XylR, ROK family |
*
Bifidobacterium dentium Bd1 Site: position = -100 score = 5.70675 sequence = ATTAGTTAGATGAATGAACTATA Gene: BDP_0576: Xylose repressor XylR, ROK family |
*
Bifidobacterium gallicum DSM 20093 Site: position = -293 score = 5.87513 sequence = AATAGTTTAATGATTTAATTATA Gene: BIFGAL_00988: Xylose repressor XylR, ROK family |
*
Bifidobacterium longum NCC2705 Site: position = -167 score = 5.464 sequence = ATAAGTTAGACGATTAAACTATA Gene: BL1710: Xylose repressor XylR, ROK family |
|
Xylose repressor XylR, ROK family |
| CRON 2. | |||||||||||
| xylB |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -76 score = 5.464 sequence = TATAGTTTAATCGTCTAACTTAT Gene: Blon_0572: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -71 score = 5.91191 sequence = TATAGTTTATTCATCTAACTATT Gene: BAD_0432: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -71 score = 5.76651 sequence = TATAGTTTATTCGTCTAACTATT Gene: BIFANG_00026: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -121 score = 5.60066 sequence = ATTAGTTTAATGAACATACTATA Gene: BLA_1052: Xylulose kinase (EC 2.7.1.17) |
|
2
Bifidobacterium breve DSM 20213 Gene: BIFBRE_00074: Xylulose kinase (EC 2.7.1.17) Gene: BIFBRE_00075: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium dentium Bd1 Site: position = -78 score = 5.70675 sequence = TATAGTTCATTCATCTAACTAAT Gene: BDP_0575: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -339 score = 5.87513 sequence = TATAATTAAATCATTAAACTATT Gene: BIFGAL_00986: Xylulose kinase (EC 2.7.1.17) |
*
Bifidobacterium longum NCC2705 Site: position = -75 score = 5.464 sequence = TATAGTTTAATCGTCTAACTTAT Gene: BL1709: Xylulose kinase (EC 2.7.1.17) |
|
Xylulose kinase (EC 2.7.1.17) |
| CRON 3. | |||||||||||
| xylA |
|
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -117 score = 5.02981 sequence = TATAGTTTAACGAATTGACAAAC Site: position = -95 score = 4.90392 sequence = CTTAGGTAATTCAATTTATTATG Gene: BAD_0422: Xylose isomerase (EC 5.3.1.5) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -96 score = 4.92325 sequence = CTTAGGTAATTCATTTTATTATC Site: position = -118 score = 4.89964 sequence = TATAGTTCAACGAATTGACAAAC Gene: BIFANG_00036: Xylose isomerase (EC 5.3.1.5) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -122 score = 5.13614 sequence = TATAGTATTTTCGTTTTACTATA Gene: BLA_0485: Xylose isomerase (EC 5.3.1.5) |
|
|
*
Bifidobacterium dentium Bd1 Site: position = -97 score = 4.88088 sequence = CTTAGGTAGATGAATTTATTATG Gene: BDP_0561: Xylose isomerase (EC 5.3.1.5) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -164 score = 5.07648 sequence = TATAATTCAATGATTTGACAAAT Site: position = -142 score = 5.0842 sequence = TATAGTTTAACGGTTTTACCATG Gene: BIFGAL_00965: Xylose isomerase (EC 5.3.1.5) |
*
Bifidobacterium longum NCC2705 Site: position = -67 score = 5.01104 sequence = CTTAGTTCGTTCGTTTTATTATT Site: position = -89 score = 4.79817 sequence = ATTAATTCAATCATTTGACAAAC Gene: BL1704: Xylose isomerase (EC 5.3.1.5) |
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Xylose isomerase (EC 5.3.1.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |