Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog XylR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode:
Biological process: Xylose utilization
Effector: Xylose
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium longum subsp. infantis ATCC 15697 2 2
Bifidobacterium adolescentis ATCC 15703 3 3
Bifidobacterium angulatum DSM 20098 3 3
Bifidobacterium animalis subsp. lactis AD011 3 3
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1 3 3
Bifidobacterium gallicum DSM 20093 3 3
Bifidobacterium longum NCC2705 3 3
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
xylR
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -166
score = 5.464
sequence = ATAAGTTAGACGATTAAACTATA

Gene: Blon_0573: Xylose repressor XylR, ROK family
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -121
score = 5.91191
sequence = AATAGTTAGATGAATAAACTATA

Gene: BAD_0433: Xylose repressor XylR, ROK family
*
Bifidobacterium angulatum DSM 20098

Site:
position = -119
score = 5.76651
sequence = AATAGTTAGACGAATAAACTATA

Gene: BIFANG_00025: Xylose repressor XylR, ROK family
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -88
score = 5.60066
sequence = TATAGTATGTTCATTAAACTAAT

Gene: BLA_1053: Xylose repressor XylR, ROK family
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00073: Xylose repressor XylR, ROK family
*
Bifidobacterium dentium Bd1

Site:
position = -100
score = 5.70675
sequence = ATTAGTTAGATGAATGAACTATA

Gene: BDP_0576: Xylose repressor XylR, ROK family
*
Bifidobacterium gallicum DSM 20093

Site:
position = -293
score = 5.87513
sequence = AATAGTTTAATGATTTAATTATA

Gene: BIFGAL_00988: Xylose repressor XylR, ROK family
*
Bifidobacterium longum NCC2705

Site:
position = -167
score = 5.464
sequence = ATAAGTTAGACGATTAAACTATA

Gene: BL1710: Xylose repressor XylR, ROK family
 
Gardnerella vaginalis 409-05
Xylose repressor XylR, ROK family
 
CRON 2.
xylB
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -76
score = 5.464
sequence = TATAGTTTAATCGTCTAACTTAT

Gene: Blon_0572: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -71
score = 5.91191
sequence = TATAGTTTATTCATCTAACTATT

Gene: BAD_0432: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -71
score = 5.76651
sequence = TATAGTTTATTCGTCTAACTATT

Gene: BIFANG_00026: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -121
score = 5.60066
sequence = ATTAGTTTAATGAACATACTATA

Gene: BLA_1052: Xylulose kinase (EC 2.7.1.17)
 
Bifidobacterium bifidum NCIMB 41171
 2
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00074: Xylulose kinase (EC 2.7.1.17)

Gene: BIFBRE_00075: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium dentium Bd1

Site:
position = -78
score = 5.70675
sequence = TATAGTTCATTCATCTAACTAAT

Gene: BDP_0575: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -339
score = 5.87513
sequence = TATAATTAAATCATTAAACTATT

Gene: BIFGAL_00986: Xylulose kinase (EC 2.7.1.17)
*
Bifidobacterium longum NCC2705

Site:
position = -75
score = 5.464
sequence = TATAGTTTAATCGTCTAACTTAT

Gene: BL1709: Xylulose kinase (EC 2.7.1.17)
 
Gardnerella vaginalis 409-05
Xylulose kinase (EC 2.7.1.17)
 
CRON 3.
xylA
 
Bifidobacterium longum subsp. infantis ATCC 15697
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -117
score = 5.02981
sequence = TATAGTTTAACGAATTGACAAAC

Site:
position = -95
score = 4.90392
sequence = CTTAGGTAATTCAATTTATTATG

Gene: BAD_0422: Xylose isomerase (EC 5.3.1.5)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -96
score = 4.92325
sequence = CTTAGGTAATTCATTTTATTATC

Site:
position = -118
score = 4.89964
sequence = TATAGTTCAACGAATTGACAAAC

Gene: BIFANG_00036: Xylose isomerase (EC 5.3.1.5)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -122
score = 5.13614
sequence = TATAGTATTTTCGTTTTACTATA

Gene: BLA_0485: Xylose isomerase (EC 5.3.1.5)
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
*
Bifidobacterium dentium Bd1

Site:
position = -97
score = 4.88088
sequence = CTTAGGTAGATGAATTTATTATG

Gene: BDP_0561: Xylose isomerase (EC 5.3.1.5)
*
Bifidobacterium gallicum DSM 20093

Site:
position = -164
score = 5.07648
sequence = TATAATTCAATGATTTGACAAAT

Site:
position = -142
score = 5.0842
sequence = TATAGTTTAACGGTTTTACCATG

Gene: BIFGAL_00965: Xylose isomerase (EC 5.3.1.5)
*
Bifidobacterium longum NCC2705

Site:
position = -67
score = 5.01104
sequence = CTTAGTTCGTTCGTTTTATTATT

Site:
position = -89
score = 4.79817
sequence = ATTAATTCAATCATTTGACAAAC

Gene: BL1704: Xylose isomerase (EC 5.3.1.5)
 
Gardnerella vaginalis 409-05
Xylose isomerase (EC 5.3.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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