Regulog BDP_2071 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:
Biological process:	Carbohydrate metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - ROK
By pathway - Carbohydrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	5	2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	5	2
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
BDP_2071	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -173 score = 5.99967 sequence = TTGCGTTCAGTTGTCAAACTCAA Gene: BDP_2071: Transcriptional regulator, ROK family	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -161 score = 5.93346 sequence = TTGAGTTAAGTTGTCAAACTCAA Gene: BL1693: Transcriptional regulator, ROK family	Gardnerella vaginalis 409-05	Transcriptional regulator, ROK family
BDP_2072	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0052: ABC transporter, ATP-binding protein	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2072: ABC transporter, ATP-binding protein	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1692: ABC transporter, ATP-binding protein	Gardnerella vaginalis 409-05	ABC transporter, ATP-binding protein

CRON 2.
BDP_2070	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -106 score = 5.99967 sequence = TTGAGTTTGACAACTGAACGCAA Gene: BDP_2070: ABC transporter, sugar-binding component	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -113 score = 5.93346 sequence = TTGAGTTTGACAACTTAACTCAA Gene: BL1694: ABC transporter, sugar-binding component	Gardnerella vaginalis 409-05	ABC transporter, sugar-binding component
BDP_2069	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2069: ABC transporter, ATP-binding component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1695: ABC transporter, ATP-binding component	Gardnerella vaginalis 409-05	ABC transporter, ATP-binding component
BDP_2068	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2068: ABC transporter, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL1696: ABC transporter, permease component	Gardnerella vaginalis 409-05	ABC transporter, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BDP_2071 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --