Regulog BL0185 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Carbohydrate metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 28 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Carbohydrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703	6	3
Bifidobacterium angulatum DSM 20098	6	3
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	8	4
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	9	5
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
BDP_0236	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -58 score = 6.08395 sequence = ATATTACAACGTTGTACAAA Site: position = -83 score = 5.35762 sequence = CATTTACAACGATGTACTAT Gene: BDP_0236: Glycoside hydrolase, family 43	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -62 score = 5.97869 sequence = AGTTTACATCGTTGTACAAA Gene: BL0183: Glycoside hydrolase, family 43	Gardnerella vaginalis 409-05	Glycoside hydrolase, family 43
BL0182	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0182: Glycoside hydrolase, family 43	Gardnerella vaginalis 409-05	Glycoside hydrolase, family 43

CRON 2.
abfA2	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -49 score = 4.66833 sequence = TATATTCAACGTTGTAAATA Site: position = -72 score = 5.50869 sequence = TTGTTACAACGATGTAAGAA Gene: BAD_0152: Alpha-L-arabinofuranosidase	* Bifidobacterium angulatum DSM 20098 Site: position = -49 score = 4.66833 sequence = TATATTCAACGTTGTAAATA Site: position = -72 score = 5.56175 sequence = TTGTTACAACGTTGTAAGAA Gene: BIFANG_01258: Alpha-L-arabinofuranosidase	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -50 score = 4.50259 sequence = TATATTCAACGTTGTAAATT Site: position = -73 score = 5.93895 sequence = TTTGTACAACGATGTAATAG Gene: BDP_0239: Alpha-L-arabinofuranosidase	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -77 score = 5.54588 sequence = TTGTTACATCGTTGTACATC Site: position = -53 score = 5.00276 sequence = ATATTGCATCGATGTAAATA Gene: BL0187: Alpha-L-arabinofuranosidase	Gardnerella vaginalis 409-05	Alpha-L-arabinofuranosidase

CRON 3.
BIFANG_01259	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	* Bifidobacterium angulatum DSM 20098 Site: position = -114 score = 5.11564 sequence = AAATTACAACGTTATAAAAG Site: position = -146 score = 5.68366 sequence = CTTGTACAACGATAGAAAAA Gene: BIFANG_01259: ABC transporter, substrate-binding protein	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC transporter, substrate-binding protein
BIFANG_01260	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01260: ABC-type sugar transporter, permease component	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transporter, permease component
BIFANG_01261	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01261: ABC-type sugar transporter, permease component	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transporter, permease component

CRON 4.
BAD_0149	Bifidobacterium longum subsp. infantis ATCC 15697	2 Bifidobacterium adolescentis ATCC 15703* Site: position = -72 score = 6.27034 sequence = GTTGTACAACGATGTAAAAC Site: position = -47 score = 5.92418 sequence = ATAGTACATCGTTGTAAAAC Gene: BAD_0146: Glycoside hydrolase, family 43 Gene: BAD_0149: Glycoside hydrolase, family 43	* Bifidobacterium angulatum DSM 20098 Site: position = -43 score = 4.9777 sequence = ATAATACATCGATGTAAATC Site: position = -69 score = 5.96147 sequence = GCTGTACAACGATGTAAAAA Gene: BIFANG_01256: Glycoside hydrolase, family 43	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -44 score = 5.35762 sequence = ATAGTACATCGTTGTAAATG Site: position = -69 score = 6.08395 sequence = TTTGTACAACGTTGTAATAT Gene: BDP_0237: Glycoside hydrolase, family 43	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -73 score = 5.97869 sequence = TTTGTACAACGATGTAAACT Gene: BL0184: Glycoside hydrolase, family 43	Gardnerella vaginalis 409-05	Glycoside hydrolase, family 43
BL0185	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0150: Transcriptional regulator of carbohydrate utilization, LacI family	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01257: Transcriptional regulator of carbohydrate utilization, LacI family	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0238: Transcriptional regulator of carbohydrate utilization, LacI family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0185: Transcriptional regulator of carbohydrate utilization, LacI family	Gardnerella vaginalis 409-05	Transcriptional regulator of carbohydrate utilization, LacI family

CRON 5.
Blon_2061	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -170 score = 5.94134 sequence = TTTGTACAACGATAGAAAAA Gene: BDP_0240: ABC-type sugar transporter, sugar-binding component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transporter, sugar-binding component
BDP_0241	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0241: ABC-type sugar transporter, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transporter, permease component
BDP_0242	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0242: ABC-type sugar transporter, permease component	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	ABC-type sugar transporter, permease component
BDP_0243	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0243: Glycosyl hydrolase family 43	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Glycosyl hydrolase family 43

CRON 6.
BL0186	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -207 score = 5.54588 sequence = GATGTACAACGATGTAACAA Site: position = -65 score = 4.72962 sequence = GAATTACAACGTTATAATGA Site: position = -231 score = 5.00276 sequence = TATTTACATCGATGCAATAT Gene: BL0186: possible esterase	Gardnerella vaginalis 409-05	possible esterase

CRON 7.
BAD_0153	Bifidobacterium longum subsp. infantis ATCC 15697	* Bifidobacterium adolescentis ATCC 15703 Site: position = -267 score = 4.69328 sequence = AAATTACAACGTTGAAAATA Site: position = -299 score = 5.83463 sequence = GTTGTACAACGATAGAAAAA Gene: BAD_0153: ABC-type sugar transport systems, substrate-binding components	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -175 score = 4.88295 sequence = GAATTCCAACGTTGTAAACG Site: position = -205 score = 6.12966 sequence = TTTGTACAACGATGGAAAAC Gene: BL0188: ABC-type sugar transport systems, substrate-binding components	Gardnerella vaginalis 409-05	ABC-type sugar transport systems, substrate-binding components
BAD_0154	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0154: ABC-type sugar transport systems, permease components	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0189: ABC-type sugar transport systems, permease components	Gardnerella vaginalis 409-05	ABC-type sugar transport systems, permease components
BAD_0155	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0155: ABC-type sugar transport systems, permease components	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705 Gene: BL0190: ABC-type sugar transport systems, permease components	Gardnerella vaginalis 409-05	ABC-type sugar transport systems, permease components
bglS	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0156: Beta-glucosidase (EC 3.2.1.21)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Beta-glucosidase (EC 3.2.1.21)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BL0185 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --