Regulog NrdR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 6 | 4 |
| Clostridium beijerincki NCIMB 8052 | 3 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 4 | 2 |
| Clostridium butyricum 5521 | 5 | 2 |
| Clostridium kluyveri DSM 555 | 2 | 1 |
| Clostridium novyi NT | 4 | 2 |
| Clostridium perfringens ATCC 13124 | 3 | 2 |
| Clostridium tetani E88 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nrdJ |
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Clostridium acetobutylicum ATCC 824 Site: position = -65 score = 5.86031 sequence = ATACAATATATAGTGT Site: position = -34 score = 5.3013 sequence = CCACTATATATAGTTT Gene: CAC1047: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Clostridium tetani E88 Site: position = -171 score = 4.50222 sequence = TAACTATACATTGTAT Site: position = -141 score = 5.89336 sequence = ATACTATATATTGTAT Gene: CTC00574: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| CRON 2. | |||||||||
| ligA2 |
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Clostridium acetobutylicum ATCC 824 Site: position = -64 score = 5.47484 sequence = ATACTATATATAGTGC Site: position = -97 score = 5.51391 sequence = AAACTATATATTGTGT Gene: CAC1195: DNA ligase (EC 6.5.1.2) |
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DNA ligase (EC 6.5.1.2) |
| CRON 3. | |||||||||
| nrdA |
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Clostridium acetobutylicum ATCC 824 Site: position = -69 score = 4.36812 sequence = AAGCGATATATTGTGG Site: position = -28 score = 5.38271 sequence = ATACTACATATTGTGG Gene: CAC3277: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium beijerincki NCIMB 8052 Site: position = -71 score = 5.15992 sequence = ATACGATATGTTGTAT Site: position = -30 score = 5.38271 sequence = ACACAATATGTAGTAG Gene: Cbei_0194: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -176 score = 5.54347 sequence = ATACAATATATAGTGA Site: position = -145 score = 5.35705 sequence = ATACAATATATAGAGT Gene: CBO2814: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium butyricum 5521 Site: position = -70 score = 5.15992 sequence = ATACGATATGTTGTAT Site: position = -28 score = 5.1427 sequence = ACACAAGATATAGTGG Gene: CBY_2909: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium novyi NT Site: position = -200 score = 4.38806 sequence = CTACTTTATTTTGTAA Gene: NT01CX_2366: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Clostridium perfringens ATCC 13124 Site: position = -27 score = 5.32313 sequence = TTACTATATATTGTGG Gene: CPF_2671: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| CBY_2910 |
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Gene: CBY_2910: hypothetical protein |
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hypothetical protein |
| nrdB |
Gene: CAC3276: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Cbei_0195: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CBO2813: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CBY_2911: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: NT01CX_2365: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: CPF_2670: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 4. | |||||||||
| nrdD |
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Clostridium acetobutylicum ATCC 824 Site: position = 0 score = 4.50953 sequence = ATGCTAAATGTAGTAA Site: position = -32 score = 5.00288 sequence = GTACAAGATATAGTGT Gene: CAC0480: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium beijerincki NCIMB 8052 Site: position = 0 score = 4.83695 sequence = ATGCTATATGTTGTGA Site: position = -32 score = 5.4671 sequence = ATACTATATATTGTGC Gene: Cbei_0068: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -32 score = 5.37497 sequence = ACACAATATGTTGTAG Site: position = 0 score = 4.83695 sequence = ATGCTATATGTTGTGA Gene: CBO0094: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium butyricum 5521 Site: position = -32 score = 5.45936 sequence = ATACAATATATTGTGC Site: position = 0 score = 4.83695 sequence = ATGCTATATGTTGTGA Gene: CBY_2237: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium kluyveri DSM 555 Site: position = -32 score = 5.63997 sequence = ACACAATATATAGTAG Site: position = 0 score = 4.57969 sequence = ATGCTACATGTTGTGA Gene: CKL_3757: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium novyi NT Site: position = -31 score = 4.98175 sequence = GTACAATATGTTGTGG Gene: NT01CX_1076: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium perfringens ATCC 13124 Site: position = -32 score = 4.78253 sequence = GTACAAGATATAGTGG Site: position = 0 score = 4.57969 sequence = ATGCTACATGTTGTGA Gene: CPF_2830: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Clostridium tetani E88 Site: position = -32 score = 5.66528 sequence = ATACAATATATTGTAG Site: position = 0 score = 4.87 sequence = ATGCTATATGTTGTAA Gene: CTC00257: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
Gene: CAC0481: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Cbei_0071: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CBO0095: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CBY_2234: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CKL_3756: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: NT01CX_1077: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CPF_2826: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: CTC00258: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |