Statistics of regulated genes

Genome	Genes	Operons
Mycobacterium abscessus ATCC 19977	13	4
Mycobacterium smegmatis str. MC2 155
Mycobacterium tuberculosis H37Rv
Mycobacterium avium 104
Mycobacterium marinum M
Mycobacterium leprae TN
Mycobacterium flavescens PYR-GCK
Mycobacterium vanbaalenii PYR-1
Mycobacterium sp. JLS

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes										Function
CRON 1.
paaZ	* Mycobacterium abscessus ATCC 19977 Site: position = -108 score = 4.8959 sequence = ACTGACCGTTCGGTCGGCCACA Site: position = -35 score = 5.42127 sequence = ACCGAACGAATGGACGGTTGGT Gene: MAB_0900c: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
ethD	Mycobacterium abscessus ATCC 19977 Gene: MAB_0899c: Possible ethyl tert-butyl ether degradation protein EthD	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Possible ethyl tert-butyl ether degradation protein EthD
CRON 2.
paaA	* Mycobacterium abscessus ATCC 19977 Site: position = -37 score = 6.13347 sequence = AATAACCGAACATTCGGTCGGT Site: position = -33 score = 4.50201 sequence = ACCGAACATTCGGTCGGTAATC Gene: MAB_0906: Phenylacetate-CoA oxygenase, PaaA subunit	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Phenylacetate-CoA oxygenase, PaaA subunit
paaB	Mycobacterium abscessus ATCC 19977 Gene: MAB_0907: Phenylacetate-CoA oxygenase, PaaB subunit	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Phenylacetate-CoA oxygenase, PaaB subunit
paaC	Mycobacterium abscessus ATCC 19977 Gene: MAB_0908: Phenylacetate-CoA oxygenase, PaaC subunit	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Phenylacetate-CoA oxygenase, PaaC subunit
paaD	Mycobacterium abscessus ATCC 19977 Gene: MAB_0909: Phenylacetate-CoA oxygenase, PaaD subunit	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Phenylacetate-CoA oxygenase, PaaD subunit
paaE	Mycobacterium abscessus ATCC 19977 Gene: MAB_0910: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaK	Mycobacterium abscessus ATCC 19977 Gene: MAB_0911: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
CRON 3.
paaR	* Mycobacterium abscessus ATCC 19977 Site: position = -92 score = 6.15351 sequence = AATAACCGATCGTTCGGTCGGT Site: position = -88 score = 4.67361 sequence = ACCGATCGTTCGGTCGGTTGTC Gene: MAB_0901c: Transcriptional regulator of phenylacetic acid degradation, TetR family	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Transcriptional regulator of phenylacetic acid degradation, TetR family
CRON 4.
paaJ	* Mycobacterium abscessus ATCC 19977 Site: position = -48 score = 4.67361 sequence = GACAACCGACCGAACGATCGGT Site: position = -44 score = 6.15351 sequence = ACCGACCGAACGATCGGTTATT Gene: MAB_0902: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaF	Mycobacterium abscessus ATCC 19977 Gene: MAB_0903: Enoyl-CoA hydratase (EC 4.2.1.17)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Enoyl-CoA hydratase (EC 4.2.1.17)
paaH	Mycobacterium abscessus ATCC 19977 Gene: MAB_0904: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaG	Mycobacterium abscessus ATCC 19977 Gene: MAB_0905: Enoyl-CoA hydratase (EC 4.2.1.17)	Mycobacterium smegmatis str. MC2 155	Mycobacterium tuberculosis H37Rv	Mycobacterium avium 104	Mycobacterium marinum M	Mycobacterium leprae TN	Mycobacterium flavescens PYR-GCK	Mycobacterium vanbaalenii PYR-1	Mycobacterium sp. JLS	Enoyl-CoA hydratase (EC 4.2.1.17)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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