Regulon of PaaR in Mycobacterium abscessus ATCC 19977
| Regulator type: | Transcription factor |
| TF locus tag: | MAB_0901c |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Mycobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -92
Score: 6.2 Sequence: AATAACCGATCGTTCGGTCGGT
Position: -88
Score: 4.7 Sequence: ACCGATCGTTCGGTCGGTTGTC
Locus tag: MAB_0901c
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
|||
|
paaR
|
Transcriptional regulator of phenylacetic acid degradation, TetR family
|
||
|
Position: -48
Score: 4.7 Sequence: GACAACCGACCGAACGATCGGT
Position: -44
Score: 6.2 Sequence: ACCGACCGAACGATCGGTTATT
Locus tag: MAB_0902
Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: MAB_0903
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: MAB_0904
Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: MAB_0905
Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
paaJ
|
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
|
||
|
paaF
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
paaH
|
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
|
||
|
paaG
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -108
Score: 4.9 Sequence: ACTGACCGTTCGGTCGGCCACA
Position: -35
Score: 5.4 Sequence: ACCGAACGAATGGACGGTTGGT
Locus tag: MAB_0900c
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: MAB_0899c
Name: ethD Funciton: Possible ethyl tert-butyl ether degradation protein EthD |
|||
|
paaZ
|
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
|
||
|
ethD
|
Possible ethyl tert-butyl ether degradation protein EthD
|
||
|
Position: -37
Score: 6.1 Sequence: AATAACCGAACATTCGGTCGGT
Position: -33
Score: 4.5 Sequence: ACCGAACATTCGGTCGGTAATC
Locus tag: MAB_0906
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: MAB_0907
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: MAB_0908
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: MAB_0909
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: MAB_0910
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: MAB_0911
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
|||
|
paaA
|
Phenylacetate-CoA oxygenase, PaaA subunit
|
||
|
paaB
|
Phenylacetate-CoA oxygenase, PaaB subunit
|
||
|
paaC
|
Phenylacetate-CoA oxygenase, PaaC subunit
|
||
|
paaD
|
Phenylacetate-CoA oxygenase, PaaD subunit
|
||
|
paaE
|
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
|
||
|
paaK
|
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |