Regulog UxuR - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Glucuronate utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By TF family - LacI
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 4 | 2 |
| Blautia hansenii DSM 20583 | ||
| Bryantella formatexigens DSM 14469 | 3 | 2 |
| Clostridiales bacterium 1_7_47_FAA | 5 | 4 |
| Clostridium bolteae ATCC BAA-613 | 5 | 4 |
| Clostridium nexile DSM 1787 | ||
| Clostridium scindens ATCC 35704 | ||
| Dorea formicigenerans ATCC 27755 | 4 | 2 |
| Dorea longicatena DSM 13814 | ||
| Eubacterium eligens ATCC 27750 | 4 | 2 |
| Eubacterium rectale ATCC 33656 | ||
| Roseburia intestinalis L1-82 | 5 | 4 |
| Ruminococcus gnavus ATCC 29149 | 5 | 4 |
| Ruminococcus lactaris ATCC 29176 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| uxuR |
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Bacteroides pectinophilus ATCC 43243 Site: position = -38 score = 6.46053 sequence = AAATGTAAGCACTTACATTT Gene: BACPEC_00410: Predicted transcription regulator for glucuronate utilization, LacI family |
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Bryantella formatexigens DSM 14469 Site: position = -102 score = 6.31368 sequence = TTGTGTAAGCGCTTACATTT Site: position = -252 score = 5.94932 sequence = CCATGTAAGCGCTTACAATC Gene: BRYFOR_01977: Predicted transcription regulator for glucuronate utilization, LacI family |
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Clostridiales bacterium 1_7_47_FAA Site: position = -137 score = 6.22459 sequence = TATTGTAAGTACTTACAATT Site: position = -34 score = 5.75182 sequence = GCTTGTAAGCGCTTACAGAA Gene: Cbac1_010100002147: Predicted transcription regulator for glucuronate utilization, LacI family |
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Clostridium bolteae ATCC BAA-613 Site: position = -137 score = 6.27947 sequence = TTTTGTAAGTGCTTACAATT Site: position = -34 score = 5.75182 sequence = GCTTGTAAGCGCTTACAGAA Gene: CLOBOL_01979: Predicted transcription regulator for glucuronate utilization, LacI family |
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Gene: DORFOR_02950: Predicted transcription regulator for glucuronate utilization, LacI family |
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Eubacterium eligens ATCC 27750 Site: position = -211 score = 5.70207 sequence = GCATGTAAGCGCTTTCATAA Site: position = -83 score = 6.51541 sequence = ATATGTAAGCGCTTACATTT Gene: EUBELI_00906: Predicted transcription regulator for glucuronate utilization, LacI family |
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Roseburia intestinalis L1-82 Site: position = -249 score = 6.0675 sequence = TTTTGTAAGCGTTTACAATT Site: position = -63 score = 5.2542 sequence = TAATGAAACTGCTTTCATTT Gene: ROSINTL182_03040: Predicted transcription regulator for glucuronate utilization, LacI family |
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Ruminococcus gnavus ATCC 29149 Site: position = -255 score = 5.51205 sequence = CATTGTAACAGCTTACATTA Site: position = -57 score = 5.61823 sequence = TAGTGTTAGTACTTACATTT Gene: RUMGNA_00428: Predicted transcription regulator for glucuronate utilization, LacI family |
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Predicted transcription regulator for glucuronate utilization, LacI family |
| uxaC |
Gene: BACPEC_00411: Uronate isomerase (EC 5.3.1.12) |
Gene: BLAHAN_01971: Uronate isomerase (EC 5.3.1.12) |
Gene: BRYFOR_01976: Uronate isomerase (EC 5.3.1.12) |
Gene: Cbac1_010100002152: Uronate isomerase (EC 5.3.1.12) |
Gene: CLOBOL_01980: Uronate isomerase (EC 5.3.1.12) |
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Dorea formicigenerans ATCC 27755 Site: position = -57 score = 6.2102 sequence = AAATGTAAGCGTTTACAATA Site: position = -235 score = 6.0243 sequence = ACGTGTAAGCGCTTACACTA Gene: DORFOR_02949: Uronate isomerase (EC 5.3.1.12) |
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Gene: EUBELI_00905: Uronate isomerase (EC 5.3.1.12) |
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Gene: ROSINTL182_03041: Uronate isomerase (EC 5.3.1.12) |
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Ruminococcus gnavus ATCC 29149 Site: position = -197 score = 5.88068 sequence = AAATGTAAGTATTTACAATT Site: position = -57 score = 6.05398 sequence = AAATGTAAGGGCTTACAAAA Gene: RUMGNA_00432: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| CRON 2. | |||||||||||||||
| uxaA |
Gene: BACPEC_00406: Altronate hydrolase (EC 4.2.1.7) |
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Gene: BRYFOR_03984: Altronate hydrolase (EC 4.2.1.7) |
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Clostridiales bacterium 1_7_47_FAA Site: position = -63 score = 6.22459 sequence = AATTGTAAGTACTTACAATA Site: position = -166 score = 5.75182 sequence = TTCTGTAAGCGCTTACAAGC Gene: Cbac1_010100002142: Altronate hydrolase (EC 4.2.1.7) |
*2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_05067: Altronate hydrolase (EC 4.2.1.7) Site: position = -89 score = 6.27947 sequence = AATTGTAAGCACTTACAAAA Site: position = -192 score = 5.75182 sequence = TTCTGTAAGCGCTTACAAGC Gene: CLOBOL_01978: Altronate hydrolase (EC 4.2.1.7) |
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Dorea formicigenerans ATCC 27755 Site: position = -148 score = 6.0243 sequence = TAGTGTAAGCGCTTACACGT Gene: DORFOR_02948: Altronate hydrolase (EC 4.2.1.7) |
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Gene: EUBELI_00908: Altronate hydrolase (EC 4.2.1.7) |
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Gene: ROSINTL182_03037: Altronate hydrolase (EC 4.2.1.7) |
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Ruminococcus gnavus ATCC 29149 Site: position = -43 score = 5.88068 sequence = AATTGTAAATACTTACATTT Site: position = -183 score = 6.05398 sequence = TTTTGTAAGCCCTTACATTT Gene: RUMGNA_00433: Altronate hydrolase (EC 4.2.1.7) |
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Altronate hydrolase (EC 4.2.1.7) |
| uxaB |
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Bacteroides pectinophilus ATCC 43243 Site: position = -103 score = 6.37791 sequence = CAATGTAAGCGCTTACATTA Gene: BACPEC_00407: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: BRYFOR_03985: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: DORFOR_02947: Altronate oxidoreductase (EC 1.1.1.58) |
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Eubacterium eligens ATCC 27750 Site: position = -105 score = 5.70207 sequence = TTATGAAAGCGCTTACATGC Site: position = -233 score = 6.51541 sequence = AAATGTAAGCGCTTACATAT Gene: EUBELI_00907: Altronate oxidoreductase (EC 1.1.1.58) |
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*2
Roseburia intestinalis L1-82 Site: position = -139 score = 5.2542 sequence = AAATGAAAGCAGTTTCATTA Gene: ROSINTL182_03039: Altronate oxidoreductase (EC 1.1.1.58) Gene: ROSINTL182_03038: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: RUMGNA_00434: Altronate oxidoreductase (EC 1.1.1.58) |
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Altronate oxidoreductase (EC 1.1.1.58) |
| CRON 3. | |||||||||||||||
| pfkA |
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Clostridiales bacterium 1_7_47_FAA Site: position = -39 score = 6.44977 sequence = TTTTGTAAGCGCTTACAATT Gene: Cbac1_010100025807: 6-phosphofructokinase (EC 2.7.1.11) |
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Clostridium bolteae ATCC BAA-613 Site: position = -37 score = 6.44977 sequence = TTTTGTAAGCGCTTACAATT Gene: CLOBOL_01311: 6-phosphofructokinase (EC 2.7.1.11) |
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6-phosphofructokinase (EC 2.7.1.11) |
| CRON 4. | |||||||||||||||
| uxaB2 |
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Clostridiales bacterium 1_7_47_FAA Site: position = -56 score = 6.13645 sequence = AAATGTAAGTACTTACAAAA Site: position = -156 score = 6.05098 sequence = AAATGTAAACACTTACAATT Gene: Cbac1_010100028614: Altronate oxidoreductase (EC 1.1.1.58) |
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Clostridium bolteae ATCC BAA-613 Site: position = -42 score = 6.30675 sequence = AAATGTAAGCACTTACAAAA Site: position = -139 score = 5.75418 sequence = AAATGTAAATACTTACAAAA Gene: CLOBOL_06887: Altronate oxidoreductase (EC 1.1.1.58) |
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Altronate oxidoreductase (EC 1.1.1.58) |
| CRON 5. | |||||||||||||||
| pgl |
Gene: BACPEC_01724: Polygalacturonase (EC 3.2.1.15) |
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Gene: CLOBOL_01436: Polygalacturonase (EC 3.2.1.15) |
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Gene: EUBELI_01594: Polygalacturonase (EC 3.2.1.15) |
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Gene: ROSINTL182_00330: Polygalacturonase (EC 3.2.1.15) |
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Ruminococcus gnavus ATCC 29149 Site: position = -17 score = 5.51205 sequence = TAATGTAAGCTGTTACAATG Site: position = -215 score = 5.61823 sequence = AAATGTAAGTACTAACACTA Gene: RUMGNA_00427: Polygalacturonase (EC 3.2.1.15) |
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Polygalacturonase (EC 3.2.1.15) |
| CRON 6. | |||||||||||||||
| ugl |
Gene: BACPEC_02146: Unsaturated glucuronyl hydrolase (EC 3.2.1.- |
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Gene: CLOBOL_01441: Unsaturated glucuronyl hydrolase (EC 3.2.1.- |
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Gene: EUBELI_00669: Unsaturated glucuronyl hydrolase (EC 3.2.1.- |
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Roseburia intestinalis L1-82 Site: position = -126 score = 6.33435 sequence = ATTTGTAAGCGCTTACAAAA Gene: ROSINTL182_00339: Unsaturated glucuronyl hydrolase (EC 3.2.1.- |
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Unsaturated glucuronyl hydrolase (EC 3.2.1.- |
| CRON 7. | |||||||||||||||
| uxuB |
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*
Bryantella formatexigens DSM 14469 Site: position = -78 score = 5.94932 sequence = GATTGTAAGCGCTTACATGG Site: position = -228 score = 6.31368 sequence = AAATGTAAGCGCTTACACAA Gene: BRYFOR_01978: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: ROSINTL182_02901: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: RUMGNA_01046: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| CRON 8. | |||||||||||||||
| PF02743 |
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Roseburia intestinalis L1-82 Site: position = -45 score = 6.08882 sequence = AAATGTAACCGCTTACATAA Gene: ROSINTL182_00594: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |