Regulog GulR - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization; Galactarate utilization; Glucarate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By trascription factor - GulR
By TF family - LysR
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization
By pathway - Galactarate utilization
By pathway - Glucarate utilization

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis
Ralstonia eutropha H16
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34
Ralstonia pickettii 12J	9	2
Ralstonia solanacearum GMI1000	10	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
kdgD	Cupriavidus taiwanensis Gene: RALTA_B0137: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Ralstonia eutropha H16 Gene: H16_B0131: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Ralstonia eutropha JMP134 Gene: Reut_B3688: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	Ralstonia metallidurans CH34 Gene: Rmet_4736: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	* Ralstonia pickettii 12J Site: position = -106 score = 6.42004 sequence = ATCAATACAAGTTCTGTATTAAT Site: position = -341 score = 6.23245 sequence = ATCGATTCAAAAACGGTATGGAT Gene: Rpic_4452: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	* Ralstonia solanacearum GMI1000 Site: position = -109 score = 6.37213 sequence = ATCGATTCAAAAAATGAATTGAT Gene: RS05369: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
kgsD	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_4451: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Ralstonia solanacearum GMI1000 Gene: RS05368: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)	Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
gudP	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134 Gene: Reut_B3689: D-glucarate permease / D-galactarate permease	Ralstonia metallidurans CH34 Gene: Rmet_4735: D-glucarate permease / D-galactarate permease	Ralstonia pickettii 12J Gene: Rpic_4450: D-glucarate permease / D-galactarate permease	Ralstonia solanacearum GMI1000 Gene: RSp0828: D-glucarate permease / D-galactarate permease	D-glucarate permease / D-galactarate permease
gudD2	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_4449: Glucarate dehydratase (EC 4.2.1.40)	Ralstonia solanacearum GMI1000 Gene: RSp0829: Glucarate dehydratase (EC 4.2.1.40)	Glucarate dehydratase (EC 4.2.1.40)
garD	Cupriavidus taiwanensis Gene: RALTA_B0782: D-galactarate dehydratase (EC 4.2.1.42)	Ralstonia eutropha H16 Gene: H16_B0965: D-galactarate dehydratase (EC 4.2.1.42)	Ralstonia eutropha JMP134 Gene: Reut_B3690: D-galactarate dehydratase (EC 4.2.1.42)	Ralstonia metallidurans CH34 Gene: Rmet_4734: D-galactarate dehydratase (EC 4.2.1.42)	Ralstonia pickettii 12J Gene: Rpic_4448: D-galactarate dehydratase (EC 4.2.1.42)	Ralstonia solanacearum GMI1000 Gene: RSp0830: D-galactarate dehydratase (EC 4.2.1.42)	D-galactarate dehydratase (EC 4.2.1.42)
udh	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_4447: Uronate dehydrogenase (EC 1.1.1.203)	Ralstonia solanacearum GMI1000 Gene: RS05364: Uronate dehydrogenase (EC 1.1.1.203)	Uronate dehydrogenase (EC 1.1.1.203)
uxuL	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_4446: Predicted glucuronolactone/galactarolactone lactonase	Ralstonia solanacearum GMI1000 Gene: RS05363: Predicted glucuronolactone/galactarolactone lactonase	Predicted glucuronolactone/galactarolactone lactonase
pgl	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000 Gene: RSp0833: Polygalacturonase (EC 3.2.1.15)	Polygalacturonase (EC 3.2.1.15)
exuT2	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_4445: Hexuronate transporter	Ralstonia solanacearum GMI1000 Gene: RSp0834: Hexuronate transporter	Hexuronate transporter

CRON 2.
gulR	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	* Ralstonia pickettii 12J Site: position = -256 score = 6.42004 sequence = ATTAATACAGAACTTGTATTGAT Site: position = -21 score = 6.23245 sequence = ATCCATACCGTTTTTGAATCGAT Gene: Rpic_4453: Predicted hexuronate/glucarate/galactarate utilization regulator, LysR family	Ralstonia solanacearum GMI1000 Gene: RS05372: Predicted hexuronate/glucarate/galactarate utilization regulator, LysR family	Predicted hexuronate/glucarate/galactarate utilization regulator, LysR family

CRON 3.
uxuL2	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J	* Ralstonia solanacearum GMI1000 Site: position = -111 score = 6.07767 sequence = ATCGATTCAAAACGTATATCGAT Gene: RS05371: Predicted glucuronolactone/galactarolactone lactonase	Predicted glucuronolactone/galactarolactone lactonase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GulR - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --