Regulog BioQ - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BioQ
- By taxonomy - Nocardiaceae
- By TF family - TetR
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 5 | 4 |
| Rhodococcus erythropolis PR4 | 5 | 4 |
| Rhodococcus opacus B4 | 14 | 6 |
| Rhodococcus sp. RHA1 | 11 | 5 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| bioF |
*
Nocardia farcinica IFM 10152 Site: position = -31 score = 5.94964 sequence = CCTGAACGGTGTTCAAG Gene: nfa18190: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Rhodococcus erythropolis PR4 Site: position = -18 score = 6.12375 sequence = GTTGAACGGTGTTCAAG Gene: RER_35040: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Rhodococcus opacus B4 Site: position = -24 score = 6.14621 sequence = GTTGAACACCGTTCAAG Gene: ROP_07820: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
*
Rhodococcus sp. RHA1 Site: position = -26 score = 6.14621 sequence = GTTGAACACCGTTCAAG Gene: RHA1_ro01054: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
Gene: nfa18200: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: RER_35030: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: ROP_07810: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: RHA1_ro01053: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 2. | |||||
| bioA |
*
Nocardia farcinica IFM 10152 Site: position = -60 score = 6.2666 sequence = CTTGAACACTGTTCAAG Gene: nfa18180: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Rhodococcus erythropolis PR4 Site: position = -37 score = 6.12822 sequence = CTTGAACACCGTTCAAC Gene: RER_35050: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Rhodococcus opacus B4 Site: position = -41 score = 6.10576 sequence = CTTGAACGGTGTTCAAC Gene: ROP_07830: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Rhodococcus sp. RHA1 Site: position = -59 score = 6.10576 sequence = CTTGAACGGTGTTCAAC Gene: RHA1_ro01055: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| CRON 3. | |||||
| bioB |
*
Nocardia farcinica IFM 10152 Site: position = -85 score = 5.97209 sequence = CCTGAACACCGTTCAAG Gene: nfa18320: Biotin synthase (EC 2.8.1.6) |
*
Rhodococcus erythropolis PR4 Site: position = -58 score = 5.85617 sequence = CGTGAACACCGTTCAAC Site: position = -42 score = 5.09969 sequence = CTTGTACGGTGTTCAAT Gene: RER_34880: Biotin synthase (EC 2.8.1.6) |
*
Rhodococcus opacus B4 Site: position = -88 score = 5.85617 sequence = CGTGAACACCGTTCAAC Site: position = -72 score = 5.09969 sequence = CTTGTACGGTGTTCAAT Gene: ROP_07700: Biotin synthase (EC 2.8.1.6) |
*
Rhodococcus sp. RHA1 Site: position = -1 score = 5.85617 sequence = CGTGAACACCGTTCAAC Site: position = 15 score = 5.09969 sequence = CTTGTACGGTGTTCAAT Gene: RHA1_ro01043: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| CRON 4. | |||||
| bioQ |
*
Nocardia farcinica IFM 10152 Site: position = -65 score = 5.84581 sequence = CTTGAACGGTGTTCAGG Gene: nfa18310: Biotin repressor, TetR family |
*
Rhodococcus erythropolis PR4 Site: position = -124 score = 5.51501 sequence = ATTGAACACCGTACAAG Site: position = -108 score = 5.83669 sequence = GTTGAACGGTGTTCACG Gene: RER_34890: Biotin repressor, TetR family |
*
Rhodococcus opacus B4 Site: position = -99 score = 5.51501 sequence = ATTGAACACCGTACAAG Site: position = -83 score = 5.83669 sequence = GTTGAACGGTGTTCACG Gene: ROP_07710: Biotin repressor, TetR family |
*
Rhodococcus sp. RHA1 Site: position = -24 score = 5.51501 sequence = ATTGAACACCGTACAAG Site: position = -8 score = 5.83669 sequence = GTTGAACGGTGTTCACG Gene: RHA1_ro01044: Biotin repressor, TetR family |
Biotin repressor, TetR family |
| CRON 5. | |||||
| bioY |
|
Gene: RER_27460: Substrate-specific component BioY of biotin ECF transporter |
*2
Rhodococcus opacus B4 Site: position = -38 score = 5.73372 sequence = CTTGAACGTCGTTCAAG Gene: ROP_53000: Substrate-specific component BioY of biotin ECF transporter Site: position = -38 score = 5.73372 sequence = CTTGAACGTCGTTCAAG Gene: ROP_52960: Substrate-specific component BioY of biotin ECF transporter |
*
Rhodococcus sp. RHA1 Site: position = -38 score = 5.73372 sequence = CTTGAACGTCGTTCAAG Gene: RHA1_ro05255: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| yhfT |
|
|
3
Rhodococcus opacus B4 Gene: ROP_53050: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Gene: ROP_53010: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Gene: ROP_52970: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
2
Rhodococcus sp. RHA1 Gene: RHA1_ro05260: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Gene: RHA1_ro05256: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| yhfS |
|
|
2
Rhodococcus opacus B4 Gene: ROP_53020: acetyl-CoA acetyltransferase Gene: ROP_52980: acetyl-CoA acetyltransferase |
Gene: RHA1_ro05257: acetyl-CoA acetyltransferase |
acetyl-CoA acetyltransferase |
| bioM |
|
Gene: RER_27450: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: ROP_53030: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: RHA1_ro05258: ATPase component BioM of energizing module of biotin ECF transporter |
ATPase component BioM of energizing module of biotin ECF transporter |
| bioN |
|
Gene: RER_27440: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: ROP_53040: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: RHA1_ro05259: Transmembrane component BioN of energizing module of biotin ECF transporter |
Transmembrane component BioN of energizing module of biotin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |