Regulog Zur - Streptomycetaceae
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By trascription factor - Zur
- By TF family - FUR
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces scabiei 87.22 | 12 | 4 |
| Streptomyces griseus subsp. griseus NBRC 13350 | 10 | 3 |
| Streptomyces coelicolor A3(2) | 16 | 5 |
| Streptomyces avermitilis MA-4680 | 11 | 3 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| rpmG2 |
*
Streptomyces scabiei 87.22 Site: position = -31 score = 5.89902 sequence = AAATGGAATTCATTTTCAGTA Gene: SCAB_40001: LSU ribosomal protein L33p |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -31 score = 5.64458 sequence = AAATGGAAACCATTGCCATAT Gene: SGR_546: LSU ribosomal protein L33p |
*
Streptomyces coelicolor A3(2) Site: position = -31 score = 5.89251 sequence = TAATGGAATTCATTTTCAGTA Gene: SCO3428: LSU ribosomal protein L33p |
*
Streptomyces avermitilis MA-4680 Site: position = -31 score = 5.68699 sequence = AAATGGAAGTCGTTTTCAGTA Gene: SAV_4643: LSU ribosomal protein L33p |
LSU ribosomal protein L33p |
| rpmE2 |
Gene: SCAB_39991: LSU ribosomal protein L31p |
Gene: SGR_547: LSU ribosomal protein L31p |
Gene: SCO3427: LSU ribosomal protein L31p |
Gene: SAV_4644: LSU ribosomal protein L31p |
LSU ribosomal protein L31p |
| yciC |
Gene: SCAB_39981: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
Gene: SGR_548: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
Gene: SCO3426: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
Gene: SAV_4645: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
| rpsR2 |
Gene: SCAB_39971: SSU ribosomal protein S18p |
Gene: SGR_549: SSU ribosomal protein S18p |
Gene: SCO3425: SSU ribosomal protein S18p |
Gene: SAV_4646: SSU ribosomal protein S18p |
SSU ribosomal protein S18p |
| CRON 2. | |||||
| znuB2 |
|
|
*
Streptomyces coelicolor A3(2) Site: position = -34 score = 4.8663 sequence = TGTTGAACATGATTTTCATTG Gene: SCO0475: Zinc ABC transporter, inner membrane permease protein ZnuB |
|
Zinc ABC transporter, inner membrane permease protein ZnuB |
| SCO0474 |
|
|
Gene: SCO0474: WD40/YVTN repeat-like-containing domain |
|
WD40/YVTN repeat-like-containing domain |
| znuA2 |
|
|
Gene: SCO0473: Zinc ABC transporter, periplasmic-binding protein ZnuA |
|
Zinc ABC transporter, periplasmic-binding protein ZnuA |
| SCO0472 |
|
|
Gene: SCO0472: WD40/YVTN repeat-like-containing domain |
|
WD40/YVTN repeat-like-containing domain |
| CRON 3. | |||||
| znuA |
*
Streptomyces scabiei 87.22 Site: position = -17 score = 5.05355 sequence = AGATGAAAATGACTGTCATGA Site: position = -39 score = 5.03163 sequence = TGTTGACAATCGTTTCCAGAT Gene: SCAB_61981: Zinc ABC transporter, periplasmic-binding protein ZnuA |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -39 score = 4.96135 sequence = TGTTGACAATCGTTTCCACTT Site: position = -17 score = 4.579 sequence = AGTTGAAAATGAGTGTCATGA Gene: SGR_5019: Zinc ABC transporter, periplasmic-binding protein ZnuA |
*
Streptomyces coelicolor A3(2) Site: position = -17 score = 4.57249 sequence = TGTTGAAAATGAGTGTCATGA Site: position = -39 score = 5.0155 sequence = TGTTGACAACGGTTTCCATAT Gene: SCO2505: Zinc ABC transporter, periplasmic-binding protein ZnuA |
*
Streptomyces avermitilis MA-4680 Site: position = -39 score = 5.26889 sequence = TGTTGACAATCGTTTCCAGTT Site: position = -17 score = 4.81695 sequence = TGTTGAAAATGACTGTCATGA Gene: SAV_5634: Zinc ABC transporter, periplasmic-binding protein ZnuA |
Zinc ABC transporter, periplasmic-binding protein ZnuA |
| znuC |
Gene: SCAB_61971: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: SGR_5018: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: SCO2506: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: SAV_5633: Zinc ABC transporter, ATP-binding protein ZnuC |
Zinc ABC transporter, ATP-binding protein ZnuC |
| znuB |
Gene: SCAB_61961: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: SGR_5017: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: SCO2507: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: SAV_5632: Zinc ABC transporter, inner membrane permease protein ZnuB |
Zinc ABC transporter, inner membrane permease protein ZnuB |
| zur |
Gene: SCAB_61951: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: SGR_5016: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: SCO2508: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: SAV_5631: Zinc homeostasis transcriptional regulator Zur, Fur family |
Zinc homeostasis transcriptional regulator Zur, Fur family |
| CRON 4. | |||||
| rpmB2 |
*
Streptomyces scabiei 87.22 Site: position = -66 score = 5.89902 sequence = TACTGAAAATGAATTCCATTT Gene: SCAB_40011: LSU ribosomal protein L28p |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -58 score = 5.64458 sequence = ATATGGCAATGGTTTCCATTT Gene: SGR_545: LSU ribosomal protein L28p |
*
Streptomyces coelicolor A3(2) Site: position = -62 score = 5.89251 sequence = TACTGAAAATGAATTCCATTA Gene: SCO3429: LSU ribosomal protein L28p |
*
Streptomyces avermitilis MA-4680 Site: position = -75 score = 5.68699 sequence = TACTGAAAACGACTTCCATTT Gene: SAV_4642: LSU ribosomal protein L28p |
LSU ribosomal protein L28p |
| rpsN2 |
Gene: SCAB_40021: SSU ribosomal protein S14p |
Gene: SGR_544: SSU ribosomal protein S14p |
Gene: SCO3430: SSU ribosomal protein S14p |
Gene: SAV_4641: SSU ribosomal protein S14p |
SSU ribosomal protein S14p |
| SC03431 |
Gene: SCAB_40031: possible membrane protein |
Gene: SGR_4067: possible membrane protein |
Gene: SCO3431: possible membrane protein |
Gene: SAV_4640: possible membrane protein |
possible membrane protein |
| CRON 5. | |||||
| rpmF2 |
*
Streptomyces scabiei 87.22 Site: position = -64 score = 5.11035 sequence = TAATGGGATCCATTTTCATGT Gene: SCAB_41531: LSU ribosomal protein L32p |
|
*
Streptomyces coelicolor A3(2) Site: position = -56 score = 4.99167 sequence = ACATGAACATCGTTTTCATGT Gene: SCO0436: LSU ribosomal protein L32p |
|
LSU ribosomal protein L32p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |