Regulog Zur - Streptomycetaceae

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Streptomycetaceae
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Streptomyces scabiei 87.22	12	4
Streptomyces griseus subsp. griseus NBRC 13350	10	3
Streptomyces coelicolor A3(2)	16	5
Streptomyces avermitilis MA-4680	11	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
rpmG2	* Streptomyces scabiei 87.22 Site: position = -31 score = 5.89902 sequence = AAATGGAATTCATTTTCAGTA Gene: SCAB_40001: LSU ribosomal protein L33p	* Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -31 score = 5.64458 sequence = AAATGGAAACCATTGCCATAT Gene: SGR_546: LSU ribosomal protein L33p	* Streptomyces coelicolor A3(2) Site: position = -31 score = 5.89251 sequence = TAATGGAATTCATTTTCAGTA Gene: SCO3428: LSU ribosomal protein L33p	* Streptomyces avermitilis MA-4680 Site: position = -31 score = 5.68699 sequence = AAATGGAAGTCGTTTTCAGTA Gene: SAV_4643: LSU ribosomal protein L33p	LSU ribosomal protein L33p
rpmE2	Streptomyces scabiei 87.22 Gene: SCAB_39991: LSU ribosomal protein L31p	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_547: LSU ribosomal protein L31p	Streptomyces coelicolor A3(2) Gene: SCO3427: LSU ribosomal protein L31p	Streptomyces avermitilis MA-4680 Gene: SAV_4644: LSU ribosomal protein L31p	LSU ribosomal protein L31p
yciC	Streptomyces scabiei 87.22 Gene: SCAB_39981: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_548: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Streptomyces coelicolor A3(2) Gene: SCO3426: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Streptomyces avermitilis MA-4680 Gene: SAV_4645: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
rpsR2	Streptomyces scabiei 87.22 Gene: SCAB_39971: SSU ribosomal protein S18p	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_549: SSU ribosomal protein S18p	Streptomyces coelicolor A3(2) Gene: SCO3425: SSU ribosomal protein S18p	Streptomyces avermitilis MA-4680 Gene: SAV_4646: SSU ribosomal protein S18p	SSU ribosomal protein S18p

CRON 2.
znuB2	Streptomyces scabiei 87.22	Streptomyces griseus subsp. griseus NBRC 13350	* Streptomyces coelicolor A3(2) Site: position = -34 score = 4.8663 sequence = TGTTGAACATGATTTTCATTG Gene: SCO0475: Zinc ABC transporter, inner membrane permease protein ZnuB	Streptomyces avermitilis MA-4680	Zinc ABC transporter, inner membrane permease protein ZnuB
SCO0474	Streptomyces scabiei 87.22	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces coelicolor A3(2) Gene: SCO0474: WD40/YVTN repeat-like-containing domain	Streptomyces avermitilis MA-4680	WD40/YVTN repeat-like-containing domain
znuA2	Streptomyces scabiei 87.22	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces coelicolor A3(2) Gene: SCO0473: Zinc ABC transporter, periplasmic-binding protein ZnuA	Streptomyces avermitilis MA-4680	Zinc ABC transporter, periplasmic-binding protein ZnuA
SCO0472	Streptomyces scabiei 87.22	Streptomyces griseus subsp. griseus NBRC 13350	Streptomyces coelicolor A3(2) Gene: SCO0472: WD40/YVTN repeat-like-containing domain	Streptomyces avermitilis MA-4680	WD40/YVTN repeat-like-containing domain

CRON 3.
znuA	* Streptomyces scabiei 87.22 Site: position = -17 score = 5.05355 sequence = AGATGAAAATGACTGTCATGA Site: position = -39 score = 5.03163 sequence = TGTTGACAATCGTTTCCAGAT Gene: SCAB_61981: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -39 score = 4.96135 sequence = TGTTGACAATCGTTTCCACTT Site: position = -17 score = 4.579 sequence = AGTTGAAAATGAGTGTCATGA Gene: SGR_5019: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Streptomyces coelicolor A3(2) Site: position = -17 score = 4.57249 sequence = TGTTGAAAATGAGTGTCATGA Site: position = -39 score = 5.0155 sequence = TGTTGACAACGGTTTCCATAT Gene: SCO2505: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Streptomyces avermitilis MA-4680 Site: position = -39 score = 5.26889 sequence = TGTTGACAATCGTTTCCAGTT Site: position = -17 score = 4.81695 sequence = TGTTGAAAATGACTGTCATGA Gene: SAV_5634: Zinc ABC transporter, periplasmic-binding protein ZnuA	Zinc ABC transporter, periplasmic-binding protein ZnuA
znuC	Streptomyces scabiei 87.22 Gene: SCAB_61971: Zinc ABC transporter, ATP-binding protein ZnuC	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_5018: Zinc ABC transporter, ATP-binding protein ZnuC	Streptomyces coelicolor A3(2) Gene: SCO2506: Zinc ABC transporter, ATP-binding protein ZnuC	Streptomyces avermitilis MA-4680 Gene: SAV_5633: Zinc ABC transporter, ATP-binding protein ZnuC	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Streptomyces scabiei 87.22 Gene: SCAB_61961: Zinc ABC transporter, inner membrane permease protein ZnuB	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_5017: Zinc ABC transporter, inner membrane permease protein ZnuB	Streptomyces coelicolor A3(2) Gene: SCO2507: Zinc ABC transporter, inner membrane permease protein ZnuB	Streptomyces avermitilis MA-4680 Gene: SAV_5632: Zinc ABC transporter, inner membrane permease protein ZnuB	Zinc ABC transporter, inner membrane permease protein ZnuB
zur	Streptomyces scabiei 87.22 Gene: SCAB_61951: Zinc homeostasis transcriptional regulator Zur, Fur family	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_5016: Zinc homeostasis transcriptional regulator Zur, Fur family	Streptomyces coelicolor A3(2) Gene: SCO2508: Zinc homeostasis transcriptional regulator Zur, Fur family	Streptomyces avermitilis MA-4680 Gene: SAV_5631: Zinc homeostasis transcriptional regulator Zur, Fur family	Zinc homeostasis transcriptional regulator Zur, Fur family

CRON 4.
rpmB2	* Streptomyces scabiei 87.22 Site: position = -66 score = 5.89902 sequence = TACTGAAAATGAATTCCATTT Gene: SCAB_40011: LSU ribosomal protein L28p	* Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -58 score = 5.64458 sequence = ATATGGCAATGGTTTCCATTT Gene: SGR_545: LSU ribosomal protein L28p	* Streptomyces coelicolor A3(2) Site: position = -62 score = 5.89251 sequence = TACTGAAAATGAATTCCATTA Gene: SCO3429: LSU ribosomal protein L28p	* Streptomyces avermitilis MA-4680 Site: position = -75 score = 5.68699 sequence = TACTGAAAACGACTTCCATTT Gene: SAV_4642: LSU ribosomal protein L28p	LSU ribosomal protein L28p
rpsN2	Streptomyces scabiei 87.22 Gene: SCAB_40021: SSU ribosomal protein S14p	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_544: SSU ribosomal protein S14p	Streptomyces coelicolor A3(2) Gene: SCO3430: SSU ribosomal protein S14p	Streptomyces avermitilis MA-4680 Gene: SAV_4641: SSU ribosomal protein S14p	SSU ribosomal protein S14p
SC03431	Streptomyces scabiei 87.22 Gene: SCAB_40031: possible membrane protein	Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_4067: possible membrane protein	Streptomyces coelicolor A3(2) Gene: SCO3431: possible membrane protein	Streptomyces avermitilis MA-4680 Gene: SAV_4640: possible membrane protein	possible membrane protein

CRON 5.
rpmF2	* Streptomyces scabiei 87.22 Site: position = -64 score = 5.11035 sequence = TAATGGGATCCATTTTCATGT Gene: SCAB_41531: LSU ribosomal protein L32p	Streptomyces griseus subsp. griseus NBRC 13350	* Streptomyces coelicolor A3(2) Site: position = -56 score = 4.99167 sequence = ACATGAACATCGTTTTCATGT Gene: SCO0436: LSU ribosomal protein L32p	Streptomyces avermitilis MA-4680	LSU ribosomal protein L32p

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Streptomycetaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --