Regulog AmtR - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Nitrogen metabolism
Effector:	GlnK-AMP, signal transduction protein
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By trascription factor - AmtR
By taxonomy - Micrococcineae
By TF family - TetR
By effector - GlnK-AMP, signal transduction protein
By pathway - Nitrogen metabolism

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	6	2
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24	6	2
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382	5	1
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
uctT	* Arthrobacter aurescens TC1 Site: position = -90 score = 4.92434 sequence = GAAAACTATCAAGTGACCGATATT Gene: AAur_0190: Urea carboxylase-related transporter, Amino acid permease family	Arthrobacter chlorophenolicus A6	* Arthrobacter sp. FB24 Site: position = -93 score = 4.83495 sequence = GAAAACTATCAAGTGACCGGTATT Gene: Arth_3666: Urea carboxylase-related transporter, Amino acid permease family	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -87 score = 5.246 sequence = AATACCTATCGCTCGATAGATACT Gene: CMM_0123: Urea carboxylase-related transporter, Amino acid permease family	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Urea carboxylase-related transporter, Amino acid permease family
amt1	Arthrobacter aurescens TC1 Gene: AAur_0189: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24 Gene: Arth_3667: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0122: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2	Arthrobacter aurescens TC1 Gene: AAur_0188: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24 Gene: Arth_3668: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0121: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Arthrobacter aurescens TC1 Gene: AAur_0187: Urea carboxylase (EC 6.3.4.6)	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24 Gene: Arth_3669: Urea carboxylase (EC 6.3.4.6)	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0120: Urea carboxylase (EC 6.3.4.6)	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Urea carboxylase (EC 6.3.4.6)
amtR	* Arthrobacter aurescens TC1 Site: position = -162 score = 4.92434 sequence = AATATCGGTCACTTGATAGTTTTC Gene: AAur_0192: Transcriptional regulator of urea utilization, TetR family	Arthrobacter chlorophenolicus A6	* Arthrobacter sp. FB24 Site: position = -163 score = 4.83495 sequence = AATACCGGTCACTTGATAGTTTTC Gene: Arth_3665: Transcriptional regulator of urea utilization, TetR family	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0119: Transcriptional regulator of urea utilization, TetR family	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Transcriptional regulator of urea utilization, TetR family
ucaB	Arthrobacter aurescens TC1 Gene: AAur_0186: Allophanate hydrolase (EC 3.5.1.54)	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24 Gene: Arth_3670: Allophanate hydrolase (EC 3.5.1.54)	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_2824: Allophanate hydrolase (EC 3.5.1.54)	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Allophanate hydrolase (EC 3.5.1.54)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AmtR - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --