Regulog SdhR - Alcaligenaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Alcaligenaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Statistics of regulated genes
Genome	Genes	Operons
Bordetella avium 197N	10	4
Bordetella bronchiseptica RB50	11	5
Bordetella petrii DSM 12804	11	5

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Genes				Function

CRON 1.
sdhR	* Bordetella avium 197N Site: position = -184 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: BAV1181: Transcriptional regulator of TCA cycle, GntR family	* Bordetella bronchiseptica RB50 Site: position = -140 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: BB3683: Transcriptional regulator of TCA cycle, GntR family	* Bordetella petrii DSM 12804 Site: position = -35 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: Bpet1819: Transcriptional regulator of TCA cycle, GntR family	Transcriptional regulator of TCA cycle, GntR family
sdhC	Bordetella avium 197N Gene: BAV1182: Succinate dehydrogenase cytochrome b-556 subunit	Bordetella bronchiseptica RB50 Gene: BB3682: Succinate dehydrogenase cytochrome b-556 subunit	Bordetella petrii DSM 12804 Gene: Bpet1820: Succinate dehydrogenase cytochrome b-556 subunit	Succinate dehydrogenase cytochrome b-556 subunit
sdhD	Bordetella avium 197N Gene: BAV1183: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556	Bordetella bronchiseptica RB50 Gene: BB3681: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556	Bordetella petrii DSM 12804 Gene: Bpet1821: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556	Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
sdhA	Bordetella avium 197N Gene: BAV1184: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Bordetella bronchiseptica RB50 Gene: BB3680: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Bordetella petrii DSM 12804 Gene: Bpet1822: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB	Bordetella avium 197N Gene: BAV1185: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Bordetella bronchiseptica RB50 Gene: BB3679: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Bordetella petrii DSM 12804 Gene: Bpet1823: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938	Bordetella avium 197N Gene: BAV1186: succinate dehydrogenase iron-sulfur subunit	Bordetella bronchiseptica RB50 Gene: BB3678: succinate dehydrogenase iron-sulfur subunit	Bordetella petrii DSM 12804 Gene: Bpet1824: succinate dehydrogenase iron-sulfur subunit	succinate dehydrogenase iron-sulfur subunit
gltA	Bordetella avium 197N Gene: BAV1187: Citrate synthase (si) (EC 2.3.3.1)	Bordetella bronchiseptica RB50 Gene: BB3677: Citrate synthase (si) (EC 2.3.3.1)	Bordetella petrii DSM 12804 Gene: Bpet1825: Citrate synthase (si) (EC 2.3.3.1)	Citrate synthase (si) (EC 2.3.3.1)

CRON 2.
mdh	* Bordetella avium 197N Site: position = -159 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: BAV1180: Malate dehydrogenase (EC 1.1.1.37)	* Bordetella bronchiseptica RB50 Site: position = -174 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: BB3684: Malate dehydrogenase (EC 1.1.1.37)	* Bordetella petrii DSM 12804 Site: position = -162 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: Bpet1818: Malate dehydrogenase (EC 1.1.1.37)	Malate dehydrogenase (EC 1.1.1.37)

CRON 3.
aceA	Bordetella avium 197N	* Bordetella bronchiseptica RB50 Site: position = -124 score = 6.70443 sequence = ATTTTTGTCTTATATAAGATATAAGC Gene: BB3339: Isocitrate lyase (EC 4.1.3.1)	* Bordetella petrii DSM 12804 Site: position = -126 score = 5.25155 sequence = TTTTTAGTCTTATATAAGAGAAGTGG Gene: Bpet3251: Isocitrate lyase (EC 4.1.3.1)	Isocitrate lyase (EC 4.1.3.1)

CRON 4.
acnB	* Bordetella avium 197N Site: position = -97 score = 6.61461 sequence = CCACAGGTCTTATATAAGATATAAGA Gene: BAV2509: Aconitate hydratase (EC 4.2.1.3)	* Bordetella bronchiseptica RB50 Site: position = -104 score = 6.29136 sequence = AGGCAAGTCTTATATAAGATATAAGA Gene: BB1850: Aconitate hydratase (EC 4.2.1.3)	* Bordetella petrii DSM 12804 Site: position = -105 score = 6.57557 sequence = ACCCAAGTCTTATATAAGATATAAGA Gene: Bpet3354: Aconitate hydratase (EC 4.2.1.3)	Aconitate hydratase (EC 4.2.1.3)

CRON 5.
acnA	* Bordetella avium 197N Site: position = -124 score = 6.38679 sequence = TCCCAGGTCTTATATAAGATAAAAGA Gene: BAV2514: Aconitate hydratase (EC 4.2.1.3)	* Bordetella bronchiseptica RB50 Site: position = -122 score = 6.43781 sequence = GATCAAGTCTTATATAAGACACAAGA Gene: BB1844: Aconitate hydratase (EC 4.2.1.3)	* Bordetella petrii DSM 12804 Site: position = -133 score = 5.80234 sequence = AGCCAAGTCTTACATAAGATATAAGA Gene: Bpet3365: Aconitate hydratase (EC 4.2.1.3)	Aconitate hydratase (EC 4.2.1.3)

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SdhR - Alcaligenaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --