Regulog SdhR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 10 | 4 |
| Bordetella bronchiseptica RB50 | 11 | 5 |
| Bordetella petrii DSM 12804 | 11 | 5 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| sdhR |
*
Bordetella avium 197N Site: position = -184 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: BAV1181: Transcriptional regulator of TCA cycle, GntR family |
*
Bordetella bronchiseptica RB50 Site: position = -140 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: BB3683: Transcriptional regulator of TCA cycle, GntR family |
*
Bordetella petrii DSM 12804 Site: position = -35 score = 7.81343 sequence = TCTTATATCTTATATAAGACATAAGA Gene: Bpet1819: Transcriptional regulator of TCA cycle, GntR family |
Transcriptional regulator of TCA cycle, GntR family |
| sdhC |
Gene: BAV1182: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: BB3682: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Bpet1820: Succinate dehydrogenase cytochrome b-556 subunit |
Succinate dehydrogenase cytochrome b-556 subunit |
| sdhD |
Gene: BAV1183: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: BB3681: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: Bpet1821: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
| sdhA |
Gene: BAV1184: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: BB3680: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Bpet1822: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
| sdhB |
Gene: BAV1185: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: BB3679: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Bpet1823: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| COG2938 |
Gene: BAV1186: succinate dehydrogenase iron-sulfur subunit |
Gene: BB3678: succinate dehydrogenase iron-sulfur subunit |
Gene: Bpet1824: succinate dehydrogenase iron-sulfur subunit |
succinate dehydrogenase iron-sulfur subunit |
| gltA |
Gene: BAV1187: Citrate synthase (si) (EC 2.3.3.1) |
Gene: BB3677: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Bpet1825: Citrate synthase (si) (EC 2.3.3.1) |
Citrate synthase (si) (EC 2.3.3.1) |
| CRON 2. | ||||
| mdh |
*
Bordetella avium 197N Site: position = -159 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: BAV1180: Malate dehydrogenase (EC 1.1.1.37) |
*
Bordetella bronchiseptica RB50 Site: position = -174 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: BB3684: Malate dehydrogenase (EC 1.1.1.37) |
*
Bordetella petrii DSM 12804 Site: position = -162 score = 7.81343 sequence = TCTTATGTCTTATATAAGATATAAGA Gene: Bpet1818: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| CRON 3. | ||||
| aceA |
|
*
Bordetella bronchiseptica RB50 Site: position = -124 score = 6.70443 sequence = ATTTTTGTCTTATATAAGATATAAGC Gene: BB3339: Isocitrate lyase (EC 4.1.3.1) |
*
Bordetella petrii DSM 12804 Site: position = -126 score = 5.25155 sequence = TTTTTAGTCTTATATAAGAGAAGTGG Gene: Bpet3251: Isocitrate lyase (EC 4.1.3.1) |
Isocitrate lyase (EC 4.1.3.1) |
| CRON 4. | ||||
| acnB |
*
Bordetella avium 197N Site: position = -97 score = 6.61461 sequence = CCACAGGTCTTATATAAGATATAAGA Gene: BAV2509: Aconitate hydratase (EC 4.2.1.3) |
*
Bordetella bronchiseptica RB50 Site: position = -104 score = 6.29136 sequence = AGGCAAGTCTTATATAAGATATAAGA Gene: BB1850: Aconitate hydratase (EC 4.2.1.3) |
*
Bordetella petrii DSM 12804 Site: position = -105 score = 6.57557 sequence = ACCCAAGTCTTATATAAGATATAAGA Gene: Bpet3354: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
| CRON 5. | ||||
| acnA |
*
Bordetella avium 197N Site: position = -124 score = 6.38679 sequence = TCCCAGGTCTTATATAAGATAAAAGA Gene: BAV2514: Aconitate hydratase (EC 4.2.1.3) |
*
Bordetella bronchiseptica RB50 Site: position = -122 score = 6.43781 sequence = GATCAAGTCTTATATAAGACACAAGA Gene: BB1844: Aconitate hydratase (EC 4.2.1.3) |
*
Bordetella petrii DSM 12804 Site: position = -133 score = 5.80234 sequence = AGCCAAGTCTTACATAAGATATAAGA Gene: Bpet3365: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |