Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR in Bordetella petrii DSM 12804

Properties
Regulator type: Transcription factor
TF locus tag: Bpet1819
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Alcaligenaceae
Statistics of regulated genes:
- Genes 11
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -133
Score: 5.8
Sequence: AGCCAAGTCTTACATAAGATATAAGA
Locus tag: Bpet3365
Name: acnA
Funciton: Aconitate hydratase (EC 4.2.1.3)
acnA
Aconitate hydratase (EC 4.2.1.3)

Position: -105
Score: 6.6
Sequence: ACCCAAGTCTTATATAAGATATAAGA
Locus tag: Bpet3354
Name: acnB
Funciton: Aconitate hydratase (EC 4.2.1.3)
acnB
Aconitate hydratase (EC 4.2.1.3)

Position: -35
Score: 7.8
Sequence: TCTTATATCTTATATAAGACATAAGA
Locus tag: Bpet1819
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Bpet1820
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Bpet1821
Name: sdhD
Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Bpet1822
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Bpet1823
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Bpet1824
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Bpet1825
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
sdhR
Transcriptional regulator of TCA cycle, GntR family
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
sdhD
Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938
succinate dehydrogenase iron-sulfur subunit
gltA
Citrate synthase (si) (EC 2.3.3.1)

Position: -162
Score: 7.8
Sequence: TCTTATGTCTTATATAAGATATAAGA
Locus tag: Bpet1818
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
mdh
Malate dehydrogenase (EC 1.1.1.37)

Position: -126
Score: 5.3
Sequence: TTTTTAGTCTTATATAAGAGAAGTGG
Locus tag: Bpet3251
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
aceA
Isocitrate lyase (EC 4.1.3.1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD