Regulon of SdhR in Bordetella petrii DSM 12804
| Regulator type: | Transcription factor |
| TF locus tag: | Bpet1819 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Regulog: | SdhR - Alcaligenaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -133
Score: 5.8 Sequence: AGCCAAGTCTTACATAAGATATAAGA
Locus tag: Bpet3365
Name: acnA Funciton: Aconitate hydratase (EC 4.2.1.3) |
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acnA
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Aconitate hydratase (EC 4.2.1.3)
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Position: -105
Score: 6.6 Sequence: ACCCAAGTCTTATATAAGATATAAGA
Locus tag: Bpet3354
Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3) |
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acnB
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Aconitate hydratase (EC 4.2.1.3)
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Position: -35
Score: 7.8 Sequence: TCTTATATCTTATATAAGACATAAGA
Locus tag: Bpet1819
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Bpet1820
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Bpet1821
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Bpet1822
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Bpet1823
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Bpet1824
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Bpet1825
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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sdhR
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Transcriptional regulator of TCA cycle, GntR family
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sdhC
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Succinate dehydrogenase cytochrome b-556 subunit
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sdhD
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Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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COG2938
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succinate dehydrogenase iron-sulfur subunit
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gltA
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Citrate synthase (si) (EC 2.3.3.1)
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Position: -162
Score: 7.8 Sequence: TCTTATGTCTTATATAAGATATAAGA
Locus tag: Bpet1818
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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Position: -126
Score: 5.3 Sequence: TTTTTAGTCTTATATAAGAGAAGTGG
Locus tag: Bpet3251
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |