Regulog PdxR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	4	2
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K	4	2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
pdxK2	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -83 score = 9.41603 sequence = AATTGGCTG-(10)-AAGCCAATT Gene: LVIS_2152: Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	* Lactobacillus sakei subsp. sakei 23K Site: position = -87 score = 9.41603 sequence = AATTGGCTG-(10)-AAGCCAATT Gene: LSA1352: Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Predicted pyridoxal kinase (EC 2.7.1.35), PF08543-family
pdxU2	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_2151: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1580: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus fermentum IFO 3956 Gene: LAF_0937: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2806: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus reuteri JCM 1112 Gene: LAR_0063: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA1353: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1672: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0916: Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
COG4475	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_2150: Uncharacterized protein conserved in bacteria	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0756: Uncharacterized protein conserved in bacteria	Lactobacillus fermentum IFO 3956 Gene: LAF_0260: Uncharacterized protein conserved in bacteria	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112 Gene: LAR_1499: Uncharacterized protein conserved in bacteria	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA1354: Uncharacterized protein conserved in bacteria	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1333: Uncharacterized protein conserved in bacteria	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Uncharacterized protein conserved in bacteria

CRON 2.
pdxR	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -66 score = 9.41603 sequence = AATTGGCTT-(10)-CAGCCAATT Gene: LVIS_2153: Putative transcritional regulator of pyridoxine metabolism, GntR family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	* Lactobacillus sakei subsp. sakei 23K Site: position = -53 score = 9.41603 sequence = AATTGGCTT-(10)-CAGCCAATT Gene: LSA1351: Putative transcritional regulator of pyridoxine metabolism, GntR family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Putative transcritional regulator of pyridoxine metabolism, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --