Regulog PdxR - Thermoanaerobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Thermoanaerobacterales
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Anaerocellum thermophilum DSM 6725	3	2
Caldicellulosiruptor saccharolyticus DSM 8903	3	2
Carboxydothermus hydrogenoformans Z-2901
Moorella thermoacetica ATCC 39073
Thermoanaerobacter ethanolicus X514
Thermoanaerobacter italicus Ab9
Thermoanaerobacter tengcongensis MB4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
pdxS	* Anaerocellum thermophilum DSM 6725 Site: position = -109 score = 11.2275 sequence = TGTATCGATACA-(72)-TATATCGATACG Gene: Athe_1909: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -108 score = 11.2275 sequence = TGTATCGATACA-(71)-TATATCGATACG Gene: Csac_1036: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Carboxydothermus hydrogenoformans Z-2901 Gene: CHY_2703: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Moorella thermoacetica ATCC 39073 Gene: Moth_0009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Thermoanaerobacter ethanolicus X514 Gene: Teth514_2241: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Thermoanaerobacter italicus Ab9 Gene: Thit_1264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Thermoanaerobacter tengcongensis MB4 Gene: TTE0823: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT	Anaerocellum thermophilum DSM 6725 Gene: Athe_1908: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Caldicellulosiruptor saccharolyticus DSM 8903 Gene: Csac_1037: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Carboxydothermus hydrogenoformans Z-2901 Gene: CHY_2702: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Moorella thermoacetica ATCC 39073 Gene: Moth_0010: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Thermoanaerobacter ethanolicus X514 Gene: Teth514_2240: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Thermoanaerobacter italicus Ab9 Gene: Thit_1263: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Thermoanaerobacter tengcongensis MB4 Gene: TTE0822: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

CRON 2.
pdxR	* Anaerocellum thermophilum DSM 6725 Site: position = -79 score = 9.86904 sequence = CGTATCGATATA-(72)-TGTATCGATACA Gene: Athe_1910: Pyridoxine biosynthesis transcriptional regulator PdxR, GntR family	* Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -78 score = 9.86904 sequence = CGTATCGATATA-(71)-TGTATCGATACA Gene: Csac_1035: Pyridoxine biosynthesis transcriptional regulator PdxR, GntR family	Carboxydothermus hydrogenoformans Z-2901	Moorella thermoacetica ATCC 39073	Thermoanaerobacter ethanolicus X514	Thermoanaerobacter italicus Ab9	Thermoanaerobacter tengcongensis MB4	Pyridoxine biosynthesis transcriptional regulator PdxR, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Thermoanaerobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --