Regulog PdxR - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 6 | 2 |
| Rhodospirillum centenum SW | ||
| Magnetospirillum magnetotacticum MS-1 | ||
| Magnetospirillum magneticum AMB-1 | ||
| Granulibacter bethesdensis CGDNIH1 | ||
| Gluconobacter oxydans 621H | ||
| Gluconacetobacter diazotrophicus PAl 5 | ||
| Azospirillum sp. B510 | ||
| Acetobacter pasteurianus IFO 3283-01 |
| Genes | Function | |||||||||
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| CRON 1. | ||||||||||
| glyA |
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Rhodospirillum rubrum ATCC 11170 Site: position = -151 score = 12.8182 sequence = AAATGGTCTG-(13)-AAATGGCAGG-(6)-CAGACCATCT Gene: Rru_A1142: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Serine hydroxymethyltransferase (EC 2.1.2.1) |
| PF01168 |
Gene: Rru_A1141: PLP-binding protein involved in PLP homeostasis |
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PLP-binding protein involved in PLP homeostasis |
| CRON 2. | ||||||||||
| PF03594 |
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Rhodospirillum rubrum ATCC 11170 Site: position = -115 score = 13.9255 sequence = AAATGGTCTG-(13)-AAGTGGCTGG-(6)-CAGGCCATTC Gene: Rru_A1144: Putative pyridoxine transport protein |
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Putative pyridoxine transport protein |
| pdxK |
Gene: Rru_A1145: Pyridoxal kinase (EC 2.7.1.35) |
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Pyridoxal kinase (EC 2.7.1.35) |
| PF00155 |
Gene: Rru_A1146: Pyridoxal phosphate-dependent transferase |
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Pyridoxal phosphate-dependent transferase |
| PF00202 |
Gene: Rru_A1147: Pyridoxal phosphate-dependent transferase |
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Pyridoxal phosphate-dependent transferase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |