Regulog PdxR - Rhodospirillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine/pyridoxal homeostasis
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhodospirillales
By trascription factor - PdxR
By TF family - GntR/MocR
By pathway - Pyridoxine/pyridoxal homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Rhodospirillum rubrum ATCC 11170	6	2
Rhodospirillum centenum SW
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Granulibacter bethesdensis CGDNIH1
Gluconobacter oxydans 621H
Gluconacetobacter diazotrophicus PAl 5
Azospirillum sp. B510
Acetobacter pasteurianus IFO 3283-01

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
glyA	* Rhodospirillum rubrum ATCC 11170 Site: position = -151 score = 12.8182 sequence = AAATGGTCTG-(13)-AAATGGCAGG-(6)-CAGACCATCT Gene: Rru_A1142: Serine hydroxymethyltransferase (EC 2.1.2.1)	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Serine hydroxymethyltransferase (EC 2.1.2.1)
PF01168	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1141: PLP-binding protein involved in PLP homeostasis	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	PLP-binding protein involved in PLP homeostasis

CRON 2.
PF03594	* Rhodospirillum rubrum ATCC 11170 Site: position = -115 score = 13.9255 sequence = AAATGGTCTG-(13)-AAGTGGCTGG-(6)-CAGGCCATTC Gene: Rru_A1144: Putative pyridoxine transport protein	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Putative pyridoxine transport protein
pdxK	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1145: Pyridoxal kinase (EC 2.7.1.35)	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Pyridoxal kinase (EC 2.7.1.35)
PF00155	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1146: Pyridoxal phosphate-dependent transferase	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Pyridoxal phosphate-dependent transferase
PF00202	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1147: Pyridoxal phosphate-dependent transferase	Rhodospirillum centenum SW	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Granulibacter bethesdensis CGDNIH1	Gluconobacter oxydans 621H	Gluconacetobacter diazotrophicus PAl 5	Azospirillum sp. B510	Acetobacter pasteurianus IFO 3283-01	Pyridoxal phosphate-dependent transferase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --