Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog HmgR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Tyrosine degradation
Effector: Homogentisate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1 5 2
Pseudomonas entomophila L48 5 2
Pseudomonas fluorescens Pf-5 5 2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440 4 2
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 5 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hmgA
 
Azotobacter vinelandii AvOP

Gene: Avin_15350: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Pseudomonas aeruginosa PAO1

Site:
position = -93
score = 6.20189
sequence = TGCGTAATTGAATTACGAT

Gene: PA2009: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Pseudomonas entomophila L48

Site:
position = -116
score = 6.42675
sequence = TTCGTAATCTGATTACGAT

Gene: PSEEN4612: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Pseudomonas fluorescens Pf-5

Site:
position = -96
score = 6.25282
sequence = TGCGTAATTGGATTACGAT

Gene: PFL_0967: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -42
score = 6.42675
sequence = TTCGTAATCTGATTACGAT

Gene: PP4621: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -63
score = 5.49695
sequence = TGCGTAATTGTTTTACGAT

Gene: PSPTO3551: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
hmgC
 
Azotobacter vinelandii AvOP

Gene: Avin_50190: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas aeruginosa PAO1

Gene: PA2008: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas entomophila L48

Gene: PSEEN4611: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0968: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP4620: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3550: Fumarylacetoacetase (EC 3.7.1.2)
Fumarylacetoacetase (EC 3.7.1.2)
hmgB
 
Azotobacter vinelandii AvOP

Gene: Avin_50200: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas aeruginosa PAO1

Gene: PA2007: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas entomophila L48

Gene: PSEEN4610: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0969: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP4619: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -62
score = 4.65592
sequence = TGCGTAATGTGGTTACAAA

Gene: PSPTO3554: Maleylacetoacetate isomerase (EC 5.2.1.2)
Maleylacetoacetate isomerase (EC 5.2.1.2)
COG2814
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA2006: Predicted tyrosine transporter, COG2814 family
 
Pseudomonas entomophila L48

Gene: PSEEN4609: Predicted tyrosine transporter, COG2814 family
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0970: Predicted tyrosine transporter, COG2814 family
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Predicted tyrosine transporter, COG2814 family
hpd
 
Azotobacter vinelandii AvOP

Gene: Avin_50170: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3553: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
CRON 2.
hmgR
 
Azotobacter vinelandii AvOP
*
Pseudomonas aeruginosa PAO1

Site:
position = -86
score = 6.20189
sequence = ATCGTAATTCAATTACGCA

Gene: PA2010: Tyrosine degradation transcriptional regulator, IclR family
*
Pseudomonas entomophila L48

Site:
position = -92
score = 6.42675
sequence = ATCGTAATCAGATTACGAA

Gene: PSEEN4613: Tyrosine degradation transcriptional regulator, IclR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -70
score = 5.04716
sequence = AACGTAATTTGATTGCCCA

Site:
position = -90
score = 6.25282
sequence = ATCGTAATCCAATTACGCA

Gene: PFL_0966: Tyrosine degradation transcriptional regulator, IclR family
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -89
score = 6.42675
sequence = ATCGTAATCAGATTACGAA

Gene: PP4622: Tyrosine degradation transcriptional regulator, IclR family
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -84
score = 5.49695
sequence = ATCGTAAAACAATTACGCA

Gene: PSPTO3552: Tyrosine degradation transcriptional regulator, IclR family
Tyrosine degradation transcriptional regulator, IclR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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