Regulog GabR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 7 | 1 |
| Ralstonia eutropha H16 | 2 | 1 |
| Ralstonia eutropha JMP134 | ||
| Ralstonia metallidurans CH34 | 6 | 2 |
| Ralstonia pickettii 12J | 6 | 2 |
| Ralstonia solanacearum GMI1000 | 6 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| argE |
*
Cupriavidus taiwanensis Site: position = -172 score = 8.96806 sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA Gene: RALTA_A1417: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family |
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Ralstonia metallidurans CH34 Site: position = -112 score = 8.96806 sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA Gene: Rmet_1610: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family |
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Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family |
| ddpA |
Gene: RALTA_A1418: ABC-type peptide transport system, permease component |
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Ralstonia metallidurans CH34 Site: position = -34 score = 7.11313 sequence = CTTGCTTC-(15)-AGGGATTC-(8)-GGGGCAAG Gene: Rmet_1614: ABC-type peptide transport system, permease component |
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ABC-type peptide transport system, permease component |
| dppB |
Gene: RALTA_A1419: ABC-type peptide transport system, permease component |
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Gene: Rmet_1615: ABC-type peptide transport system, permease component |
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ABC-type peptide transport system, permease component |
| dppC |
Gene: RALTA_A1420: ABC-type peptide transport system, periplasmic component |
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Gene: Rmet_1616: ABC-type peptide transport system, periplasmic component |
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ABC-type peptide transport system, periplasmic component |
| dppD |
Gene: RALTA_A1421: ABC-type peptide transport system, ATP-binding component |
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Gene: Rmet_1617: ABC-type peptide transport system, ATP-binding component |
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ABC-type peptide transport system, ATP-binding component |
| gabT |
Gene: RALTA_A1422: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Ralstonia eutropha H16 Site: position = -134 score = 9.71274 sequence = ATTGGCAC-(15)-AGCGGTAC-(9)-GGGCCAAG Gene: H16_B0981: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Gene: Rmet_1618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Ralstonia pickettii 12J Site: position = -102 score = 12.5272 sequence = AGTGGTTC-(15)-ATTGGGTC-(10)-GAGCCAAT Gene: Rpic_3721: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Ralstonia solanacearum GMI1000 Site: position = -97 score = 13.1432 sequence = ATTGGCTC-(15)-ATTGGGTC-(10)-GGGCCAAT Gene: RSc0029: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabD |
Gene: RALTA_A1423: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: H16_B0982: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Reut_C6272: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Rmet_4942: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
2
Ralstonia pickettii 12J Gene: Rpic_3722: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) Gene: Rpic_4318: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: RSc0028: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
| CRON 2. | |||||||
| gbtA |
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*
Ralstonia pickettii 12J Site: position = -210 score = 12.4578 sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AGAACAAT Gene: Rpic_1467: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*
Ralstonia solanacearum GMI1000 Site: position = -131 score = 12.4399 sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AAGACCAT Gene: RS02922: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
| gbtD |
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Gene: Rpic_1468: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: RS02921: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
| gbtB |
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Gene: Rpic_1469: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: RS02920: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| gbtC |
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Gene: Rpic_1470: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: RS02919: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |