Regulog GabR - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Cupriavidus taiwanensis	7	1
Ralstonia eutropha H16	2	1
Ralstonia eutropha JMP134
Ralstonia metallidurans CH34	6	2
Ralstonia pickettii 12J	6	2
Ralstonia solanacearum GMI1000	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
argE	* Cupriavidus taiwanensis Site: position = -172 score = 8.96806 sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA Gene: RALTA_A1417: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family	Ralstonia eutropha H16	Ralstonia eutropha JMP134	* Ralstonia metallidurans CH34 Site: position = -112 score = 8.96806 sequence = AGTGGCTC-(15)-ATATGGAC-(8)-GGTACCAA Gene: Rmet_1610: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family
ddpA	Cupriavidus taiwanensis Gene: RALTA_A1418: ABC-type peptide transport system, permease component	Ralstonia eutropha H16	Ralstonia eutropha JMP134	* Ralstonia metallidurans CH34 Site: position = -34 score = 7.11313 sequence = CTTGCTTC-(15)-AGGGATTC-(8)-GGGGCAAG Gene: Rmet_1614: ABC-type peptide transport system, permease component	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	ABC-type peptide transport system, permease component
dppB	Cupriavidus taiwanensis Gene: RALTA_A1419: ABC-type peptide transport system, permease component	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34 Gene: Rmet_1615: ABC-type peptide transport system, permease component	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	ABC-type peptide transport system, permease component
dppC	Cupriavidus taiwanensis Gene: RALTA_A1420: ABC-type peptide transport system, periplasmic component	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34 Gene: Rmet_1616: ABC-type peptide transport system, periplasmic component	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	ABC-type peptide transport system, periplasmic component
dppD	Cupriavidus taiwanensis Gene: RALTA_A1421: ABC-type peptide transport system, ATP-binding component	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34 Gene: Rmet_1617: ABC-type peptide transport system, ATP-binding component	Ralstonia pickettii 12J	Ralstonia solanacearum GMI1000	ABC-type peptide transport system, ATP-binding component
gabT	Cupriavidus taiwanensis Gene: RALTA_A1422: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Ralstonia eutropha H16 Site: position = -134 score = 9.71274 sequence = ATTGGCAC-(15)-AGCGGTAC-(9)-GGGCCAAG Gene: H16_B0981: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34 Gene: Rmet_1618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Ralstonia pickettii 12J Site: position = -102 score = 12.5272 sequence = AGTGGTTC-(15)-ATTGGGTC-(10)-GAGCCAAT Gene: Rpic_3721: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Ralstonia solanacearum GMI1000 Site: position = -97 score = 13.1432 sequence = ATTGGCTC-(15)-ATTGGGTC-(10)-GGGCCAAT Gene: RSc0029: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD	Cupriavidus taiwanensis Gene: RALTA_A1423: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Ralstonia eutropha H16 Gene: H16_B0982: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Ralstonia eutropha JMP134 Gene: Reut_C6272: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Ralstonia metallidurans CH34 Gene: Rmet_4942: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	2 Ralstonia pickettii 12J Gene: Rpic_3722: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) Gene: Rpic_4318: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Ralstonia solanacearum GMI1000 Gene: RSc0028: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

CRON 2.
gbtA	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	* Ralstonia pickettii 12J Site: position = -210 score = 12.4578 sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AGAACAAT Gene: Rpic_1467: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	* Ralstonia solanacearum GMI1000 Site: position = -131 score = 12.4399 sequence = AATGGCTC-(15)-ATTGGGTC-(8)-AAGACCAT Gene: RS02922: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_1468: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Ralstonia solanacearum GMI1000 Gene: RS02921: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_1469: Predicted gamma-aminobutyrate ABC transporter, permease component	Ralstonia solanacearum GMI1000 Gene: RS02920: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC	Cupriavidus taiwanensis	Ralstonia eutropha H16	Ralstonia eutropha JMP134	Ralstonia metallidurans CH34	Ralstonia pickettii 12J Gene: Rpic_1470: Predicted gamma-aminobutyrate ABC transporter, permease component	Ralstonia solanacearum GMI1000 Gene: RS02919: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --