Regulog FdsR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | ModE |
| Regulation mode: | repressor (activator) |
| Biological process: | Formate oxydation |
| Effector: | Formate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - ModE
- By effector - Formate
- By pathway - Formate oxydation
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 8 | 2 |
| Bordetella bronchiseptica RB50 | 7 | 2 |
| Bordetella petrii DSM 12804 | 7 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| fdsR |
*
Bordetella avium 197N Site: position = -82 score = 5.94304 sequence = ATATGTTTATTTTTACATAT Gene: BAV0819: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Bordetella bronchiseptica RB50 Site: position = -88 score = 6.12781 sequence = ATATGTTATTCAGTACATAT Gene: BB1324: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
*
Bordetella petrii DSM 12804 Site: position = -88 score = 6.06452 sequence = ATATGCTGTTAAAAACATAT Gene: Bpet3682: Formate dehydrogenase transcriptional regulator FdsR, ModE family |
Formate dehydrogenase transcriptional regulator FdsR, ModE family |
| moaA |
Gene: BAV0820: Molybdenum cofactor biosynthesis protein MoaA |
Gene: BB1325: Molybdenum cofactor biosynthesis protein MoaA |
Gene: Bpet3681: Molybdenum cofactor biosynthesis protein MoaA |
Molybdenum cofactor biosynthesis protein MoaA |
| mobA |
Gene: BAV0821: Molybdopterin-guanine dinucleotide biosynthesis protein MobA |
|
|
Molybdopterin-guanine dinucleotide biosynthesis protein MobA |
| CRON 2. | ||||
| fdsG |
*
Bordetella avium 197N Site: position = -145 score = 5.86148 sequence = ATATGTTATTTCTTGCATAT Site: position = -65 score = 5.94304 sequence = ATATGTAAAAATAAACATAT Gene: BAV0818: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Bordetella bronchiseptica RB50 Site: position = -81 score = 6.12781 sequence = ATATGTACTGAATAACATAT Site: position = -158 score = 5.62082 sequence = ATATGTCATTTATTTCTTAT Gene: BB1323: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
*
Bordetella petrii DSM 12804 Site: position = -95 score = 6.06452 sequence = ATATGTTTTTAACAGCATAT Site: position = -172 score = 5.80094 sequence = ATATGTCATTAATTTCTTAT Gene: Bpet3683: NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), gamma subunit |
| fdsB |
Gene: BAV0817: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: BB1322: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
Gene: Bpet3684: NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), beta subunit |
| fdsA |
Gene: BAV0816: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: BB1321: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
Gene: Bpet3685: NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), alpha subunit |
| fdsC |
Gene: BAV0815: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: BB1320: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
Gene: Bpet3686: NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), accessory protein |
| fdsD |
Gene: BAV0814: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: BB1319: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Gene: Bpet3687: NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
NAD-dependent formate dehydrogenase (EC 1.2.1.2), delta subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |