Regulog NrtR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrtR
- By taxonomy - Micrococcineae
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 8 | 3 |
| Arthrobacter chlorophenolicus A6 | 5 | 1 |
| Arthrobacter sp. FB24 | 5 | 1 |
| Beutenbergia cavernae DSM 12333 | 5 | 1 |
| Brachybacterium faecium DSM 4810 | 5 | 1 |
| Brevibacterium linens BL2 | ||
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | ||
| Janibacter sp. HTCC2649 | ||
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | 4 | 1 |
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | ||
| Renibacterium salmoninarum ATCC 33209 | 4 | 1 |
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| nrtR |
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Arthrobacter aurescens TC1 Site: position = -59 score = 5.70161 sequence = TTCTAGTCAACATGACTTTAA Gene: AAur_2535: Nudix-related transcriptional regulator NrtR |
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Arthrobacter chlorophenolicus A6 Site: position = -78 score = 5.50566 sequence = TTTGAGTCAAGTTGACTATAA Gene: Achl_2298: Nudix-related transcriptional regulator NrtR |
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Arthrobacter sp. FB24 Site: position = -101 score = 5.91768 sequence = TTCTAGTCATGTTGACTATAA Gene: Arth_2561: Nudix-related transcriptional regulator NrtR |
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Beutenbergia cavernae DSM 12333 Site: position = -42 score = 4.28407 sequence = ATAAGGTCACGTTCACCTTTA Site: position = -71 score = 4.82156 sequence = TTAGGGTTGAGTCGACTCTAA Gene: Bcav_2777: Nudix-related transcriptional regulator NrtR |
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Brachybacterium faecium DSM 4810 Site: position = -72 score = 4.73563 sequence = TTCTGGTCACCGTGAGACTAA Site: position = -36 score = 5.55328 sequence = TAAAGGTCAACGCGACTTTAA Gene: Bfae_03740: Nudix-related transcriptional regulator NrtR |
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Kocuria rhizophila DC2201 Site: position = -80 score = 5.69996 sequence = TTAGTGTCACAGTGACTTTTA Gene: KRH_00470: Nudix-related transcriptional regulator NrtR |
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Renibacterium salmoninarum ATCC 33209 Site: position = -11 score = 6.29416 sequence = TTAAAGTCAAAATGACTATAA Gene: RSal33209_1516: Nudix-related transcriptional regulator NrtR |
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Nudix-related transcriptional regulator NrtR |
| nadA |
Gene: AAur_2534: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Achl_2297: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Arth_2560: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Bcav_2776: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Bfae_03750: Quinolinate synthetase (EC 4.1.99.-) |
Gene: BlinB01003364: Quinolinate synthetase (EC 4.1.99.-) |
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Gene: JNB_01375: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Jden_1458: Quinolinate synthetase (EC 4.1.99.-) |
Gene: KRH_00460: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Ksed_23170: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Lxx16490: Quinolinate synthetase (EC 4.1.99.-) |
Gene: RSal33209_1517: Quinolinate synthetase (EC 4.1.99.-) |
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Quinolinate synthetase (EC 4.1.99.-) |
| nadB |
Gene: AAur_2533: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Achl_2296: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Arth_2559: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Bcav_2775: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Bfae_03760: L-aspartate oxidase (EC 1.4.3.16) |
Gene: BlinB01003365: L-aspartate oxidase (EC 1.4.3.16) |
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Gene: JNB_09399: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Jden_2094: L-aspartate oxidase (EC 1.4.3.16) |
Gene: KRH_00450: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Ksed_23160: L-aspartate oxidase (EC 1.4.3.16) |
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Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1518: L-aspartate oxidase (EC 1.4.3.16) Gene: RSal33209_1519: L-aspartate oxidase (EC 1.4.3.16) |
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L-aspartate oxidase (EC 1.4.3.16) |
| nadC |
Gene: AAur_2532: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Achl_2295: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Arth_2558: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Bcav_2774: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Bfae_03770: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: BlinB01003366: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
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Gene: JNB_09394: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Jden_2093: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: KRH_00440: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Ksed_23150: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Lxx16510: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
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Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
| sufS |
Gene: AAur_2531: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Achl_2294: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Arth_2557: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Bcav_2773: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Bfae_03780: Cysteine desulfurase (EC 2.8.1.7) |
Gene: BlinB01003367: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: KRH_00420: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: Lxx16520: Cysteine desulfurase (EC 2.8.1.7) |
Gene: RSal33209_1521: Cysteine desulfurase (EC 2.8.1.7) |
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Cysteine desulfurase (EC 2.8.1.7) |
| CRON 2. | |||||||||||||||
| nrtR2 |
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Arthrobacter aurescens TC1 Site: position = -56 score = 6.15238 sequence = TTATCGTCAACTTGACGATAA Site: position = -11 score = 5.9121 sequence = TTATTGTCAAGATGACGATAA Gene: AAur_3478: Nudix-related transcriptional regulator NrtR |
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Nudix-related transcriptional regulator NrtR |
| CRON 3. | |||||||||||||||
| PF01145 |
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Arthrobacter aurescens TC1 Site: position = -42 score = 6.15238 sequence = TTATCGTCAAGTTGACGATAA Site: position = -87 score = 5.9121 sequence = TTATCGTCATCTTGACAATAA Gene: AAur_3479: band 7 protein |
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band 7 protein |
| nadF |
Gene: AAur_3480: ATP-NAD kinase, PpnK-type |
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ATP-NAD kinase, PpnK-type |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |