Regulog NrtR - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	NrtR
Regulation mode:	repressor
Biological process:	NAD biosynthesis
Effector:	Adenosine diphosphate ribose
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By trascription factor - NrtR
By taxonomy - Micrococcineae
By TF family - NrtR
By effector - Adenosine diphosphate ribose
By pathway - NAD biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	8	3
Arthrobacter chlorophenolicus A6	5	1
Arthrobacter sp. FB24	5	1
Beutenbergia cavernae DSM 12333	5	1
Brachybacterium faecium DSM 4810	5	1
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201	4	1
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209	4	1
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
nrtR	* Arthrobacter aurescens TC1 Site: position = -59 score = 5.70161 sequence = TTCTAGTCAACATGACTTTAA Gene: AAur_2535: Nudix-related transcriptional regulator NrtR	* Arthrobacter chlorophenolicus A6 Site: position = -78 score = 5.50566 sequence = TTTGAGTCAAGTTGACTATAA Gene: Achl_2298: Nudix-related transcriptional regulator NrtR	* Arthrobacter sp. FB24 Site: position = -101 score = 5.91768 sequence = TTCTAGTCATGTTGACTATAA Gene: Arth_2561: Nudix-related transcriptional regulator NrtR	* Beutenbergia cavernae DSM 12333 Site: position = -42 score = 4.28407 sequence = ATAAGGTCACGTTCACCTTTA Site: position = -71 score = 4.82156 sequence = TTAGGGTTGAGTCGACTCTAA Gene: Bcav_2777: Nudix-related transcriptional regulator NrtR	* Brachybacterium faecium DSM 4810 Site: position = -72 score = 4.73563 sequence = TTCTGGTCACCGTGAGACTAA Site: position = -36 score = 5.55328 sequence = TAAAGGTCAACGCGACTTTAA Gene: Bfae_03740: Nudix-related transcriptional regulator NrtR	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	* Kocuria rhizophila DC2201 Site: position = -80 score = 5.69996 sequence = TTAGTGTCACAGTGACTTTTA Gene: KRH_00470: Nudix-related transcriptional regulator NrtR	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	* Renibacterium salmoninarum ATCC 33209 Site: position = -11 score = 6.29416 sequence = TTAAAGTCAAAATGACTATAA Gene: RSal33209_1516: Nudix-related transcriptional regulator NrtR	Tropheryma whipplei str. Twist	Nudix-related transcriptional regulator NrtR
nadA	Arthrobacter aurescens TC1 Gene: AAur_2534: Quinolinate synthetase (EC 4.1.99.-)	Arthrobacter chlorophenolicus A6 Gene: Achl_2297: Quinolinate synthetase (EC 4.1.99.-)	Arthrobacter sp. FB24 Gene: Arth_2560: Quinolinate synthetase (EC 4.1.99.-)	Beutenbergia cavernae DSM 12333 Gene: Bcav_2776: Quinolinate synthetase (EC 4.1.99.-)	Brachybacterium faecium DSM 4810 Gene: Bfae_03750: Quinolinate synthetase (EC 4.1.99.-)	Brevibacterium linens BL2 Gene: BlinB01003364: Quinolinate synthetase (EC 4.1.99.-)	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649 Gene: JNB_01375: Quinolinate synthetase (EC 4.1.99.-)	Jonesia denitrificans DSM 20603 Gene: Jden_1458: Quinolinate synthetase (EC 4.1.99.-)	Kocuria rhizophila DC2201 Gene: KRH_00460: Quinolinate synthetase (EC 4.1.99.-)	Kytococcus sedentarius DSM 20547 Gene: Ksed_23170: Quinolinate synthetase (EC 4.1.99.-)	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx16490: Quinolinate synthetase (EC 4.1.99.-)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1517: Quinolinate synthetase (EC 4.1.99.-)	Tropheryma whipplei str. Twist	Quinolinate synthetase (EC 4.1.99.-)
nadB	Arthrobacter aurescens TC1 Gene: AAur_2533: L-aspartate oxidase (EC 1.4.3.16)	Arthrobacter chlorophenolicus A6 Gene: Achl_2296: L-aspartate oxidase (EC 1.4.3.16)	Arthrobacter sp. FB24 Gene: Arth_2559: L-aspartate oxidase (EC 1.4.3.16)	Beutenbergia cavernae DSM 12333 Gene: Bcav_2775: L-aspartate oxidase (EC 1.4.3.16)	Brachybacterium faecium DSM 4810 Gene: Bfae_03760: L-aspartate oxidase (EC 1.4.3.16)	Brevibacterium linens BL2 Gene: BlinB01003365: L-aspartate oxidase (EC 1.4.3.16)	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649 Gene: JNB_09399: L-aspartate oxidase (EC 1.4.3.16)	Jonesia denitrificans DSM 20603 Gene: Jden_2094: L-aspartate oxidase (EC 1.4.3.16)	Kocuria rhizophila DC2201 Gene: KRH_00450: L-aspartate oxidase (EC 1.4.3.16)	Kytococcus sedentarius DSM 20547 Gene: Ksed_23160: L-aspartate oxidase (EC 1.4.3.16)	Leifsonia xyli subsp. xyli str. CTCB07	2 Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1518: L-aspartate oxidase (EC 1.4.3.16) Gene: RSal33209_1519: L-aspartate oxidase (EC 1.4.3.16)	Tropheryma whipplei str. Twist	L-aspartate oxidase (EC 1.4.3.16)
nadC	Arthrobacter aurescens TC1 Gene: AAur_2532: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Arthrobacter chlorophenolicus A6 Gene: Achl_2295: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Arthrobacter sp. FB24 Gene: Arth_2558: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Beutenbergia cavernae DSM 12333 Gene: Bcav_2774: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Brachybacterium faecium DSM 4810 Gene: Bfae_03770: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Brevibacterium linens BL2 Gene: BlinB01003366: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649 Gene: JNB_09394: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Jonesia denitrificans DSM 20603 Gene: Jden_2093: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Kocuria rhizophila DC2201 Gene: KRH_00440: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Kytococcus sedentarius DSM 20547 Gene: Ksed_23150: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx16510: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
sufS	Arthrobacter aurescens TC1 Gene: AAur_2531: Cysteine desulfurase (EC 2.8.1.7)	Arthrobacter chlorophenolicus A6 Gene: Achl_2294: Cysteine desulfurase (EC 2.8.1.7)	Arthrobacter sp. FB24 Gene: Arth_2557: Cysteine desulfurase (EC 2.8.1.7)	Beutenbergia cavernae DSM 12333 Gene: Bcav_2773: Cysteine desulfurase (EC 2.8.1.7)	Brachybacterium faecium DSM 4810 Gene: Bfae_03780: Cysteine desulfurase (EC 2.8.1.7)	Brevibacterium linens BL2 Gene: BlinB01003367: Cysteine desulfurase (EC 2.8.1.7)	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201 Gene: KRH_00420: Cysteine desulfurase (EC 2.8.1.7)	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx16520: Cysteine desulfurase (EC 2.8.1.7)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1521: Cysteine desulfurase (EC 2.8.1.7)	Tropheryma whipplei str. Twist	Cysteine desulfurase (EC 2.8.1.7)

CRON 2.
nrtR2	* Arthrobacter aurescens TC1 Site: position = -56 score = 6.15238 sequence = TTATCGTCAACTTGACGATAA Site: position = -11 score = 5.9121 sequence = TTATTGTCAAGATGACGATAA Gene: AAur_3478: Nudix-related transcriptional regulator NrtR	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Nudix-related transcriptional regulator NrtR

CRON 3.
PF01145	* Arthrobacter aurescens TC1 Site: position = -42 score = 6.15238 sequence = TTATCGTCAAGTTGACGATAA Site: position = -87 score = 5.9121 sequence = TTATCGTCATCTTGACAATAA Gene: AAur_3479: band 7 protein	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	band 7 protein
nadF	Arthrobacter aurescens TC1 Gene: AAur_3480: ATP-NAD kinase, PpnK-type	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	ATP-NAD kinase, PpnK-type

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrtR - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --