Regulog NrdR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Nocardiaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 4 | 2 |
| Rhodococcus erythropolis PR4 | 4 | 1 |
| Rhodococcus opacus B4 | 4 | 1 |
| Rhodococcus sp. RHA1 | 4 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| nrdH |
*
Nocardia farcinica IFM 10152 Site: position = -191 score = 4.9255 sequence = CCACTAGGTGTAGTGT Site: position = -223 score = 3.76968 sequence = TCGCAACATGTCGTGT Gene: nfa43090: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Rhodococcus erythropolis PR4 Site: position = -133 score = 4.9255 sequence = CCACTAGGTGTAGTGT Site: position = -165 score = 3.7385 sequence = TCACAACATCTCGCGT Gene: RER_23500: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Rhodococcus opacus B4 Site: position = -188 score = 4.23484 sequence = TCACAACATCTCGGGT Site: position = -156 score = 4.9255 sequence = CCACTAGGTGTAGTGT Gene: ROP_64920: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Rhodococcus sp. RHA1 Site: position = -188 score = 4.23484 sequence = TCACAACATCTCGGGT Site: position = -156 score = 4.9255 sequence = CCACTAGGTGTAGTGT Gene: RHA1_ro06439: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
Gene: nfa43080: Ribonucleotide reduction protein NrdI |
Gene: RER_23510: Ribonucleotide reduction protein NrdI |
Gene: ROP_64930: Ribonucleotide reduction protein NrdI |
Gene: RHA1_ro06440: Ribonucleotide reduction protein NrdI |
Ribonucleotide reduction protein NrdI |
| nrdE |
Gene: nfa43070: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) / Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RER_23520: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) @ intein-containing |
Gene: ROP_64940: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) @ intein-containing |
Gene: RHA1_ro06441: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) @ intein-containing |
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) @ intein-containing |
| nrdF |
*
Nocardia farcinica IFM 10152 Site: position = -124 score = 4.47637 sequence = ACACAACACCTTGTGT Site: position = -92 score = 4.08085 sequence = ACACAACGAGTAGTGT Gene: nfa42980: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RER_23530: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: ROP_64950: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RHA1_ro06442: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |